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The map label for this gene is rhaA [H]

Identifier: 238921988

GI number: 238921988

Start: 182675

End: 183919

Strand: Reverse

Name: rhaA [H]

Synonym: EUBELI_20223

Alternate gene names: 238921988

Gene position: 183919-182675 (Counterclockwise)

Preceding gene: 238921989

Following gene: 238921987

Centisome position: 29.35

GC content: 37.35

Gene sequence:

>1245_bases
ATGCTATATATGACTAATGAACGATATGAATCAGCAAGGAAGATATATCAGAGTATAGGAGTTGATACTGAGGCTGCATT
AGATAGATTAAAGAATGTGCCGGTATCAATGCATTGCTGGCAGGGAGATGATGTAATTGGTTTTGACAGCAGAGAAAGTC
TGTCAGGTGGTATACAGACTACTGGAAATTATCCGGGAAGAGCAGCTACTCCTGAGCAGCTTATGCAGGATATAAGCAAA
GTATTGACACTTGTACCTGGAAAGAAGAAGCTAAATCTTCATGCCAGTTATGCCATTATAGATGACGGTTCAGACAGGGA
TTCAATTAAACCAAAACATTTTACCAGATGGGTTGAATTTGCTAAGAAATACAATATGGGAATTGATTTTAATCCAACAT
TTTTCTCACATAGAATGGTTAAAGATGGACTTACATTATCCTCACCAGATGAAGAAGTAAGAAAATTCTGGATTGAACAT
GGCAAGAGATGTATTGAGATATCAGAATATTTTGCTAATGAAACAGGACAGCCATGTGTAATGAACATATGGATTCCGGA
TGGCTATAAGGATATTCCGGCAGACAGACTTGGACCAAGAAGGAGATTTAAAGAATCTTTAGATGAAATTCTTTCAATTC
CATATGATAAGAGCAAAGTGTTTGTGTGTCTTGAATCTAAAGTATTTGGCATAGGCGTTGAATCATACACAGTTGGTTCG
TCTGAATTCTGCATGAATTATGTAGCAAGAGCAGGCATAACCCCACTTATGGATAATGGACACTATCATCCTACAGAGGT
TGTGTCAGATAAGGTATCATCAATGCTTTTATTCAATGACCACTTAGCATTACATATTACAAGACCTGTAAGATGGGACA
GCGATCATGTAGTTTTATATGATGACGAAACCAGAGAGATTGCTAAAGAAATTGTCAGAGCAGATGCGCTTGACAAGGTA
TTTATAGCAACTGACTATTTCGATGCATCAATTAATAGAATATCTGCATGGATAACCGGAATGAGAAGTGTTCAGAAAGC
TCTTTTGTATGCATTGTTAGAGCCAGAATTACTTCGCAATCTTCAGAACGAAGGAAGGTTCACAGAACTTATGGCAGCAC
AGGAAGAATTAAAGATTATGCCATTTGGAGATATATGGCAGGAATATCTTAATAGAGAAAATGTGGCAGCTGATTATGTC
AGTGAGGTTATGGATTACGAAAAGAAAGTATTGGAGGCACGATAA

Upstream 100 bases:

>100_bases
TAAGAATTTGAAGGAAGCAAGAGCGTGTGTAAGAGATTCCTTTGATATTAAACGATTTGAGCAGAAAAGATAATAAATTT
CAGATTATATAAGGAGGATA

Downstream 100 bases:

>100_bases
TGAAAGATATATTAACAGCACCTTTTGTTAAAGAAATGTGTGATACTACAGCTAATATGTATCGTCTTGGCTGGGACGAA
AGAAATGGTGGTAATATCAG

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MLYMTNERYESARKIYQSIGVDTEAALDRLKNVPVSMHCWQGDDVIGFDSRESLSGGIQTTGNYPGRAATPEQLMQDISK
VLTLVPGKKKLNLHASYAIIDDGSDRDSIKPKHFTRWVEFAKKYNMGIDFNPTFFSHRMVKDGLTLSSPDEEVRKFWIEH
GKRCIEISEYFANETGQPCVMNIWIPDGYKDIPADRLGPRRRFKESLDEILSIPYDKSKVFVCLESKVFGIGVESYTVGS
SEFCMNYVARAGITPLMDNGHYHPTEVVSDKVSSMLLFNDHLALHITRPVRWDSDHVVLYDDETREIAKEIVRADALDKV
FIATDYFDASINRISAWITGMRSVQKALLYALLEPELLRNLQNEGRFTELMAAQEELKIMPFGDIWQEYLNRENVAADYV
SEVMDYEKKVLEAR

Sequences:

>Translated_414_residues
MLYMTNERYESARKIYQSIGVDTEAALDRLKNVPVSMHCWQGDDVIGFDSRESLSGGIQTTGNYPGRAATPEQLMQDISK
VLTLVPGKKKLNLHASYAIIDDGSDRDSIKPKHFTRWVEFAKKYNMGIDFNPTFFSHRMVKDGLTLSSPDEEVRKFWIEH
GKRCIEISEYFANETGQPCVMNIWIPDGYKDIPADRLGPRRRFKESLDEILSIPYDKSKVFVCLESKVFGIGVESYTVGS
SEFCMNYVARAGITPLMDNGHYHPTEVVSDKVSSMLLFNDHLALHITRPVRWDSDHVVLYDDETREIAKEIVRADALDKV
FIATDYFDASINRISAWITGMRSVQKALLYALLEPELLRNLQNEGRFTELMAAQEELKIMPFGDIWQEYLNRENVAADYV
SEVMDYEKKVLEAR
>Mature_414_residues
MLYMTNERYESARKIYQSIGVDTEAALDRLKNVPVSMHCWQGDDVIGFDSRESLSGGIQTTGNYPGRAATPEQLMQDISK
VLTLVPGKKKLNLHASYAIIDDGSDRDSIKPKHFTRWVEFAKKYNMGIDFNPTFFSHRMVKDGLTLSSPDEEVRKFWIEH
GKRCIEISEYFANETGQPCVMNIWIPDGYKDIPADRLGPRRRFKESLDEILSIPYDKSKVFVCLESKVFGIGVESYTVGS
SEFCMNYVARAGITPLMDNGHYHPTEVVSDKVSSMLLFNDHLALHITRPVRWDSDHVVLYDDETREIAKEIVRADALDKV
FIATDYFDASINRISAWITGMRSVQKALLYALLEPELLRNLQNEGRFTELMAAQEELKIMPFGDIWQEYLNRENVAADYV
SEVMDYEKKVLEAR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI48994990, Length=418, Percent_Identity=50.4784688995215, Blast_Score=441, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009308
- InterPro:   IPR013022 [H]

Pfam domain/function: PF06134 RhaA [H]

EC number: =5.3.1.14 [H]

Molecular weight: Translated: 47449; Mature: 47449

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYMTNERYESARKIYQSIGVDTEAALDRLKNVPVSMHCWQGDDVIGFDSRESLSGGIQT
CEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCEECCCCCHHHCCCCEE
TGNYPGRAATPEQLMQDISKVLTLVPGKKKLNLHASYAIIDDGSDRDSIKPKHFTRWVEF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHH
AKKYNMGIDFNPTFFSHRMVKDGLTLSSPDEEVRKFWIEHGKRCIEISEYFANETGQPCV
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEHHHHHHCCCCCCCEE
MNIWIPDGYKDIPADRLGPRRRFKESLDEILSIPYDKSKVFVCLESKVFGIGVESYTVGS
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCEECCC
SEFCMNYVARAGITPLMDNGHYHPTEVVSDKVSSMLLFNDHLALHITRPVRWDSDHVVLY
HHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHEEEEECCEEEEEECCCEECCCCEEEE
DDETREIAKEIVRADALDKVFIATDYFDASINRISAWITGMRSVQKALLYALLEPELLRN
CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LQNEGRFTELMAAQEELKIMPFGDIWQEYLNRENVAADYVSEVMDYEKKVLEAR
HHCCCCHHHHHHHHHHCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYMTNERYESARKIYQSIGVDTEAALDRLKNVPVSMHCWQGDDVIGFDSRESLSGGIQT
CEEECCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCCEECCCCCHHHCCCCEE
TGNYPGRAATPEQLMQDISKVLTLVPGKKKLNLHASYAIIDDGSDRDSIKPKHFTRWVEF
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHH
AKKYNMGIDFNPTFFSHRMVKDGLTLSSPDEEVRKFWIEHGKRCIEISEYFANETGQPCV
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEHHHHHHCCCCCCCEE
MNIWIPDGYKDIPADRLGPRRRFKESLDEILSIPYDKSKVFVCLESKVFGIGVESYTVGS
EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCEEEECCCCEECCC
SEFCMNYVARAGITPLMDNGHYHPTEVVSDKVSSMLLFNDHLALHITRPVRWDSDHVVLY
HHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHEEEEECCEEEEEECCCEECCCCEEEE
DDETREIAKEIVRADALDKVFIATDYFDASINRISAWITGMRSVQKALLYALLEPELLRN
CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
LQNEGRFTELMAAQEELKIMPFGDIWQEYLNRENVAADYVSEVMDYEKKVLEAR
HHCCCCHHHHHHHHHHCEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA