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The map label for this gene is ypdB [H]

Identifier: 238921836

GI number: 238921836

Start: 47993

End: 48703

Strand: Reverse

Name: ypdB [H]

Synonym: EUBELI_20069

Alternate gene names: 238921836

Gene position: 48703-47993 (Counterclockwise)

Preceding gene: 238921837

Following gene: 238921835

Centisome position: 7.77

GC content: 31.79

Gene sequence:

>711_bases
ATGAATATATTAATATGTGATGATGATAAAATCTGTGTTGAGCGGATGAAGGAATATGTGCAGGATTTTTTCAGAGACAG
AAAAATTGCTGATTATAAGATATATGAATATTTTAGTGGAGAAGCAGCCGCCAGAGAATCTGACATTATAGATATAGCTT
TTCTTGATGTTGAGATGGAGGGCATTAATGGTATAGAAGCCAGCAAAATTTTAAGAAAAAATAATAAGGGTATTGTTGTT
TTCATTATTACATCTTATATGGGTTATCTAGATGATGCTATGGATGAAGGTGTGTTTCGGTATATTAATAAACCGCTTGA
TAAGAATGTAATAAGCAGAGGGTTGCGGAAAGCAGTTGAGCTGTGCTATAAGAAACAAAGTAAGAAGATTGTGATTAAGG
AATCCAAAAACAATGTGATTATAGAACAGGACGATATAATATATATTGAATCAATTGCAAGGAAAAGATGTGTGTATACT
GAAAAACAGGAGTATTTAACTTTAGAGAGTTTAGCTTATTGGAAAAAGCTTCTGGATGATGATATGTTTTTTCTGGTAAA
TAAATCTATTATAGTAAATATTAAGAAAGTTGAACAATTTTCAAATAATAACATAAGGCTTAAAGGAATAGAGCAGGAGA
TTCCGTTATCACGCGACAGGAAAAGTGAGTTTAAACAAAAATTGCTTCTATACCTTGCAGGACAGGAGTAG

Upstream 100 bases:

>100_bases
TATGTTGTAATGAATGTCAGTATATTGGTATCTGCACTATGGATGCACAAAAGAAAATAATGTATAATATTCCTAAGTCG
TAAATTACGAGGAGAAGCTT

Downstream 100 bases:

>100_bases
GGGATGGGGATTGTTTTAAGCTATGCGTTTGCTCATATTATAGAAGCTGTAATTTTATGGATGAGCATGTCTCAGATGTA
CGAGCATCGTTATAAAAAAT

Product: two-component system, LytT family, response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MNILICDDDKICVERMKEYVQDFFRDRKIADYKIYEYFSGEAAARESDIIDIAFLDVEMEGINGIEASKILRKNNKGIVV
FIITSYMGYLDDAMDEGVFRYINKPLDKNVISRGLRKAVELCYKKQSKKIVIKESKNNVIIEQDDIIYIESIARKRCVYT
EKQEYLTLESLAYWKKLLDDDMFFLVNKSIIVNIKKVEQFSNNNIRLKGIEQEIPLSRDRKSEFKQKLLLYLAGQE

Sequences:

>Translated_236_residues
MNILICDDDKICVERMKEYVQDFFRDRKIADYKIYEYFSGEAAARESDIIDIAFLDVEMEGINGIEASKILRKNNKGIVV
FIITSYMGYLDDAMDEGVFRYINKPLDKNVISRGLRKAVELCYKKQSKKIVIKESKNNVIIEQDDIIYIESIARKRCVYT
EKQEYLTLESLAYWKKLLDDDMFFLVNKSIIVNIKKVEQFSNNNIRLKGIEQEIPLSRDRKSEFKQKLLLYLAGQE
>Mature_236_residues
MNILICDDDKICVERMKEYVQDFFRDRKIADYKIYEYFSGEAAARESDIIDIAFLDVEMEGINGIEASKILRKNNKGIVV
FIITSYMGYLDDAMDEGVFRYINKPLDKNVISRGLRKAVELCYKKQSKKIVIKESKNNVIIEQDDIIYIESIARKRCVYT
EKQEYLTLESLAYWKKLLDDDMFFLVNKSIIVNIKKVEQFSNNNIRLKGIEQEIPLSRDRKSEFKQKLLLYLAGQE

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=200, Percent_Identity=26.5, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27753; Mature: 27753

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILICDDDKICVERMKEYVQDFFRDRKIADYKIYEYFSGEAAARESDIIDIAFLDVEME
CEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEC
GINGIEASKILRKNNKGIVVFIITSYMGYLDDAMDEGVFRYINKPLDKNVISRGLRKAVE
CCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LCYKKQSKKIVIKESKNNVIIEQDDIIYIESIARKRCVYTEKQEYLTLESLAYWKKLLDD
HHHHCCCCEEEEEECCCCEEEECCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
DMFFLVNKSIIVNIKKVEQFSNNNIRLKGIEQEIPLSRDRKSEFKQKLLLYLAGQE
CEEEEECCCCEEEEHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNILICDDDKICVERMKEYVQDFFRDRKIADYKIYEYFSGEAAARESDIIDIAFLDVEME
CEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEC
GINGIEASKILRKNNKGIVVFIITSYMGYLDDAMDEGVFRYINKPLDKNVISRGLRKAVE
CCCCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LCYKKQSKKIVIKESKNNVIIEQDDIIYIESIARKRCVYTEKQEYLTLESLAYWKKLLDD
HHHHCCCCEEEEEECCCCEEEECCCEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
DMFFLVNKSIIVNIKKVEQFSNNNIRLKGIEQEIPLSRDRKSEFKQKLLLYLAGQE
CEEEEECCCCEEEEHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]