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The map label for this gene is xynB [H]

Identifier: 238921811

GI number: 238921811

Start: 25467

End: 26420

Strand: Reverse

Name: xynB [H]

Synonym: EUBELI_20044

Alternate gene names: 238921811

Gene position: 26420-25467 (Counterclockwise)

Preceding gene: 238921812

Following gene: 238921808

Centisome position: 4.22

GC content: 40.57

Gene sequence:

>954_bases
ATGACAGATACGCAGAATGAGGTGTTTAAGACACCAGTAAACAAGATAAGGCTGTTTGAGCATGGGGCTCCGGGTTCGCA
GAACCTTAAGCTTACAAGAAAATATTACACTGAAGATATGCCTGATGGAAGAGTAAAGCATATAGTGCAGAACATTACAG
ATCCGGATATTGTTCCTTATATACCTGATGGTATTGGTAACAGTACAGACAGACAAAGGATTCCGGCAGTATTGATTATT
CCAGGAGGTGCGTTCAGACGCCTTGTATACAACTTTGAAGGTGAAGATGTTGCAAAGTGGCTTAATAGTATGGGAATAGC
TGCATTTGTTCTTGAATGCAGACTTCCATCAGATGAACATGATAATGCAGAGGATGTCCCACTTATAGATGCTATGCGCG
CAATGAGAGTTATAAGAGGAAGGGCGCAGGAATTCGGTATAGATGAAGCTAAGATAGGCGTTATGGGCTTTTCAGCAGGA
GGCTTTATGGCAGCGTTATTATCAACAGCGTATGAAAGTGATGTGTATGCGGATTATAAGTATAAGGATGAATATGATAA
ACTATCAGCAAGACCAGATTTTGCTGTTTGTTCATATCCGGTTATAAGTATTGACGATTGTATTGAAGCAGGCAAAAGAT
ATATGTCTGAGGAACAGGTGCTTGAGAGAATCAGTGACGGTAAGGCAAAGATACTGCATAAGTATAATCCGGATAAGCTT
GTAAGACCGGATATGCCGCCAGTATTTATATGTGAAACGGATGATGACAGAACAACATTGTCTGAGAACAGTGTGGGCTT
TTATATGGCAGCAAGAAAAGCCGGGGTAAGTGCTGAACTTCATATATTCAGAACAGGTGGCCATGGTTATGGCTGTGGTG
ATGATTTTGCACAGACTGGTGAGTGGAAAGTACTTTTTACAAAGTGGATTAAGAGTATTGGAATTATTAGTTAA

Upstream 100 bases:

>100_bases
TTTCGGAAGAATATGATGAGAGTGATATGCTTATGCATTATGATGAGCTGAGCATACAGGCTAATAAGCTTTTGTTTCTT
GAGAGCAGGGAGGAGTAGAT

Downstream 100 bases:

>100_bases
GATGGATATAGTATACGAGGATAAAGATAAGATTATATTAAACATGCCGGTTGCTGGTGATGGAAAGTATGGTGGAAATA
TGGCAGTCCAGGCAGCTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MTDTQNEVFKTPVNKIRLFEHGAPGSQNLKLTRKYYTEDMPDGRVKHIVQNITDPDIVPYIPDGIGNSTDRQRIPAVLII
PGGAFRRLVYNFEGEDVAKWLNSMGIAAFVLECRLPSDEHDNAEDVPLIDAMRAMRVIRGRAQEFGIDEAKIGVMGFSAG
GFMAALLSTAYESDVYADYKYKDEYDKLSARPDFAVCSYPVISIDDCIEAGKRYMSEEQVLERISDGKAKILHKYNPDKL
VRPDMPPVFICETDDDRTTLSENSVGFYMAARKAGVSAELHIFRTGGHGYGCGDDFAQTGEWKVLFTKWIKSIGIIS

Sequences:

>Translated_317_residues
MTDTQNEVFKTPVNKIRLFEHGAPGSQNLKLTRKYYTEDMPDGRVKHIVQNITDPDIVPYIPDGIGNSTDRQRIPAVLII
PGGAFRRLVYNFEGEDVAKWLNSMGIAAFVLECRLPSDEHDNAEDVPLIDAMRAMRVIRGRAQEFGIDEAKIGVMGFSAG
GFMAALLSTAYESDVYADYKYKDEYDKLSARPDFAVCSYPVISIDDCIEAGKRYMSEEQVLERISDGKAKILHKYNPDKL
VRPDMPPVFICETDDDRTTLSENSVGFYMAARKAGVSAELHIFRTGGHGYGCGDDFAQTGEWKVLFTKWIKSIGIIS
>Mature_316_residues
TDTQNEVFKTPVNKIRLFEHGAPGSQNLKLTRKYYTEDMPDGRVKHIVQNITDPDIVPYIPDGIGNSTDRQRIPAVLIIP
GGAFRRLVYNFEGEDVAKWLNSMGIAAFVLECRLPSDEHDNAEDVPLIDAMRAMRVIRGRAQEFGIDEAKIGVMGFSAGG
FMAALLSTAYESDVYADYKYKDEYDKLSARPDFAVCSYPVISIDDCIEAGKRYMSEEQVLERISDGKAKILHKYNPDKLV
RPDMPPVFICETDDDRTTLSENSVGFYMAARKAGVSAELHIFRTGGHGYGCGDDFAQTGEWKVLFTKWIKSIGIIS

Specific function: B.fibrisolvens is located in the rumen of ruminant animals, where it contributes to the animal's digestion of plant material by hydrolyzing hemicellulose with its xylanases [H]

COG id: COG0657

COG function: function code I; Esterase/lipase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013094
- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07859 Abhydrolase_3; PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 35476; Mature: 35344

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDTQNEVFKTPVNKIRLFEHGAPGSQNLKLTRKYYTEDMPDGRVKHIVQNITDPDIVPY
CCCCHHHHHHCCHHHEEEEECCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCCCCC
IPDGIGNSTDRQRIPAVLIIPGGAFRRLVYNFEGEDVAKWLNSMGIAAFVLECRLPSDEH
CCCCCCCCCCHHHCCEEEEECCHHHHHHEECCCCHHHHHHHHHCCHHHEEEEECCCCCCC
DNAEDVPLIDAMRAMRVIRGRAQEFGIDEAKIGVMGFSAGGFMAALLSTAYESDVYADYK
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEECCC
YKDEYDKLSARPDFAVCSYPVISIDDCIEAGKRYMSEEQVLERISDGKAKILHKYNPDKL
CCCCHHHHCCCCCCEEECCCCEEHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCC
VRPDMPPVFICETDDDRTTLSENSVGFYMAARKAGVSAELHIFRTGGHGYGCGDDFAQTG
CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHCCCCEEEEEEEECCCCCCCCCHHHCCC
EWKVLFTKWIKSIGIIS
CEEEHHHHHHHHHCCCC
>Mature Secondary Structure 
TDTQNEVFKTPVNKIRLFEHGAPGSQNLKLTRKYYTEDMPDGRVKHIVQNITDPDIVPY
CCCHHHHHHCCHHHEEEEECCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHCCCCCCCCC
IPDGIGNSTDRQRIPAVLIIPGGAFRRLVYNFEGEDVAKWLNSMGIAAFVLECRLPSDEH
CCCCCCCCCCHHHCCEEEEECCHHHHHHEECCCCHHHHHHHHHCCHHHEEEEECCCCCCC
DNAEDVPLIDAMRAMRVIRGRAQEFGIDEAKIGVMGFSAGGFMAALLSTAYESDVYADYK
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEECCC
YKDEYDKLSARPDFAVCSYPVISIDDCIEAGKRYMSEEQVLERISDGKAKILHKYNPDKL
CCCCHHHHCCCCCCEEECCCCEEHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCCCCC
VRPDMPPVFICETDDDRTTLSENSVGFYMAARKAGVSAELHIFRTGGHGYGCGDDFAQTG
CCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHCCCCEEEEEEEECCCCCCCCCHHHCCC
EWKVLFTKWIKSIGIIS
CEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1909424 [H]