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The map label for this gene is ygaF [H]

Identifier: 238921796

GI number: 238921796

Start: 15842

End: 16297

Strand: Reverse

Name: ygaF [H]

Synonym: EUBELI_20029

Alternate gene names: 238921796

Gene position: 16297-15842 (Counterclockwise)

Preceding gene: 238921797

Following gene: 238921795

Centisome position: 2.6

GC content: 38.38

Gene sequence:

>456_bases
ATGTTAGAAGTAGGGAAAAAAGCACCGGACTTTGAATTGCCGGATCAGAACGGAGAAATGCATAAATTAAGCGATTATGC
AGGAAAAAAAGTGATCTTATATTTTTATCCAAAGGATAATACGCCAGGATGTACGAAGCAGGCATGTGGCTTTTCTGAGC
GTTATCCACAGTTTACTGAGAAGGGAGCTGTTATTCTCGGAGTAAGCAAGGACTCTGTAGCGTCTCACAAGAGATTTGAA
GAAAAATACGGACTGGCATTTACGCTATTAGCAGACCCGGATCGTAAAGTTATTGAAGCATATGATGTCTGGAAAGAAAA
GAAAAATTATGGAAAAGTATCTATGGGTGTAGTAAGAACTACATATCTTATTGATGAGCAGGGAATCATTATAAAGGCAA
ATGATAAAGTCAAGGCGGCAGATGATCCTGAAAATATGCTTAAGGAATTGGCATAA

Upstream 100 bases:

>100_bases
CCATTATTTCTCGCTCAGAAATCAATAGATGCAACAGAAGCAGACAAGCAGGTTGTTACAGACCTGCTAGATACATTAAA
AGCAAATGGAGGAATAAAAT

Downstream 100 bases:

>100_bases
TGAAGATTATTTTATCACCTGCAAAAAAGATGATTGTAGATACCGATAACTTAGCACCGCTTGAATTGCCTGTCTATATT
GATAAGACAGCAGAAGTATT

Product: peroxiredoxin (alkyl hydroperoxide reductase subunit C)

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MLEVGKKAPDFELPDQNGEMHKLSDYAGKKVILYFYPKDNTPGCTKQACGFSERYPQFTEKGAVILGVSKDSVASHKRFE
EKYGLAFTLLADPDRKVIEAYDVWKEKKNYGKVSMGVVRTTYLIDEQGIIIKANDKVKAADDPENMLKELA

Sequences:

>Translated_151_residues
MLEVGKKAPDFELPDQNGEMHKLSDYAGKKVILYFYPKDNTPGCTKQACGFSERYPQFTEKGAVILGVSKDSVASHKRFE
EKYGLAFTLLADPDRKVIEAYDVWKEKKNYGKVSMGVVRTTYLIDEQGIIIKANDKVKAADDPENMLKELA
>Mature_151_residues
MLEVGKKAPDFELPDQNGEMHKLSDYAGKKVILYFYPKDNTPGCTKQACGFSERYPQFTEKGAVILGVSKDSVASHKRFE
EKYGLAFTLLADPDRKVIEAYDVWKEKKNYGKVSMGVVRTTYLIDEQGIIIKANDKVKAADDPENMLKELA

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Homo sapiens, GI32189392, Length=145, Percent_Identity=37.2413793103448, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI4505591, Length=146, Percent_Identity=30.8219178082192, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI32455266, Length=146, Percent_Identity=30.8219178082192, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI32455264, Length=146, Percent_Identity=30.8219178082192, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1788825, Length=153, Percent_Identity=43.7908496732026, Blast_Score=127, Evalue=3e-31,
Organism=Saccharomyces cerevisiae, GI6322180, Length=99, Percent_Identity=40.4040404040404, Blast_Score=82, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17738015, Length=139, Percent_Identity=35.2517985611511, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17017; Mature: 17017

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEVGKKAPDFELPDQNGEMHKLSDYAGKKVILYFYPKDNTPGCTKQACGFSERYPQFTE
CCCCCCCCCCCCCCCCCCCEEEHHCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCHHH
KGAVILGVSKDSVASHKRFEEKYGLAFTLLADPDRKVIEAYDVWKEKKNYGKVSMGVVRT
CCEEEEEECCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEE
TYLIDEQGIIIKANDKVKAADDPENMLKELA
EEEECCCCEEEEECCCEECCCCHHHHHHHCC
>Mature Secondary Structure
MLEVGKKAPDFELPDQNGEMHKLSDYAGKKVILYFYPKDNTPGCTKQACGFSERYPQFTE
CCCCCCCCCCCCCCCCCCCEEEHHCCCCCEEEEEEEECCCCCCCCHHHCCCCCCCCCHHH
KGAVILGVSKDSVASHKRFEEKYGLAFTLLADPDRKVIEAYDVWKEKKNYGKVSMGVVRT
CCEEEEEECCHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEEE
TYLIDEQGIIIKANDKVKAADDPENMLKELA
EEEECCCCEEEEECCCEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]