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The map label for this gene is adiY [H]

Identifier: 238921621

GI number: 238921621

Start: 3660650

End: 3661414

Strand: Reverse

Name: adiY [H]

Synonym: NT01EI_3776

Alternate gene names: 238921621

Gene position: 3661414-3660650 (Counterclockwise)

Preceding gene: 238921622

Following gene: 238921620

Centisome position: 96.04

GC content: 40.52

Gene sequence:

>765_bases
ATGAAACTTTGCTGTGATGAATGTTGTGCGATAGTTTTAACAGAGAAAGATACGGATGTTAGATTTTGCGAAGGGGATAT
TGTTAAATTTACTGAAAATAATCTGATGCTAGTCTCCGTTGAAAATGATTCAATCGATTTTTCTACGCTGGACTCCTCCC
TGATTCTCTATGTTTCCTGTGATCTAATAAAAGACTATCTGCATTTTTTAAAGAAAGATCTCACCCACTATACGCCGGTA
TCGCGTGGATTTCCGCCTTATATGATAGAGCCTTGTCGTACGCCCTATGTGTTCCGTGAGGCTGCCAGCCACTCGGTGAT
GCGGGAGACCAATGAGATAGAGTTTGAGCGTAAGCGCTCACTGACATTTGCCGCCTTATCCATTTTCCTTAATAATAGAA
GCTTTATACCATTTTTAATGAGAATGGTTCGCAGTAATATAAGTTCGAATGTATATAATATGATTCAGAATGATATTCAT
AAGCCATGGAGCCTGACGGCGGTCGCCAGTTGCCTGTGTCTGAGCCCAAGCTCTTTAAAGAAAAAATTAAAAAATGAACA
GACCAGCTACAGCAAAATCGTGACTGATTGCCGTATGCGCTATGCAGTGGAACAGTTGTTGATTTTTAATAAGAACATTT
CTCAGGTATCGACGCTATGCGGTTATAGCAGTACCTCTTACTTTATTTCTGTATTCAAAGAGTATTATGGTGTGACTCCG
TTGAACTATGTACACCGTTACCGCGATGGCGGCATACTGCCATAA

Upstream 100 bases:

>100_bases
GATGTCAGATTTAGACCTCTGTTTATGCCTTATTCAAGTGTTAGGACGTTAGAGTGTGATTTTGATAAGGCATTTTTACA
TTTATGTAGGATGTTCTGCT

Downstream 100 bases:

>100_bases
TTTTCCTGCCGTGCTATCCCTTTAGCATGATGCTGCCGACAAGGATGTCGTCCCTTTGCCTGTACCCTTCCTTTCCTTCA
TCCTTTCCTCGCTTCCATGA

Product: porin thermoregulatory protein EnvY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKLCCDECCAIVLTEKDTDVRFCEGDIVKFTENNLMLVSVENDSIDFSTLDSSLILYVSCDLIKDYLHFLKKDLTHYTPV
SRGFPPYMIEPCRTPYVFREAASHSVMRETNEIEFERKRSLTFAALSIFLNNRSFIPFLMRMVRSNISSNVYNMIQNDIH
KPWSLTAVASCLCLSPSSLKKKLKNEQTSYSKIVTDCRMRYAVEQLLIFNKNISQVSTLCGYSSTSYFISVFKEYYGVTP
LNYVHRYRDGGILP

Sequences:

>Translated_254_residues
MKLCCDECCAIVLTEKDTDVRFCEGDIVKFTENNLMLVSVENDSIDFSTLDSSLILYVSCDLIKDYLHFLKKDLTHYTPV
SRGFPPYMIEPCRTPYVFREAASHSVMRETNEIEFERKRSLTFAALSIFLNNRSFIPFLMRMVRSNISSNVYNMIQNDIH
KPWSLTAVASCLCLSPSSLKKKLKNEQTSYSKIVTDCRMRYAVEQLLIFNKNISQVSTLCGYSSTSYFISVFKEYYGVTP
LNYVHRYRDGGILP
>Mature_254_residues
MKLCCDECCAIVLTEKDTDVRFCEGDIVKFTENNLMLVSVENDSIDFSTLDSSLILYVSCDLIKDYLHFLKKDLTHYTPV
SRGFPPYMIEPCRTPYVFREAASHSVMRETNEIEFERKRSLTFAALSIFLNNRSFIPFLMRMVRSNISSNVYNMIQNDIH
KPWSLTAVASCLCLSPSSLKKKLKNEQTSYSKIVTDCRMRYAVEQLLIFNKNISQVSTLCGYSSTSYFISVFKEYYGVTP
LNYVHRYRDGGILP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790557, Length=252, Percent_Identity=51.1904761904762, Blast_Score=268, Evalue=2e-73,
Organism=Escherichia coli, GI1786778, Length=249, Percent_Identity=50.2008032128514, Blast_Score=215, Evalue=2e-57,
Organism=Escherichia coli, GI1789933, Length=238, Percent_Identity=35.7142857142857, Blast_Score=140, Evalue=6e-35,
Organism=Escherichia coli, GI1787776, Length=128, Percent_Identity=39.84375, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1789932, Length=125, Percent_Identity=39.2, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1786776, Length=129, Percent_Identity=35.6589147286822, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29316; Mature: 29316

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLCCDECCAIVLTEKDTDVRFCEGDIVKFTENNLMLVSVENDSIDFSTLDSSLILYVSC
CCCCHHHCCEEEEECCCCCCEEECCCEEEEECCCEEEEEECCCCCCHHHHCCCEEEEEEH
DLIKDYLHFLKKDLTHYTPVSRGFPPYMIEPCRTPYVFREAASHSVMRETNEIEFERKRS
HHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LTFAALSIFLNNRSFIPFLMRMVRSNISSNVYNMIQNDIHKPWSLTAVASCLCLSPSSLK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH
KKLKNEQTSYSKIVTDCRMRYAVEQLLIFNKNISQVSTLCGYSSTSYFISVFKEYYGVTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCH
LNYVHRYRDGGILP
HHHHHHHCCCCCCC
>Mature Secondary Structure
MKLCCDECCAIVLTEKDTDVRFCEGDIVKFTENNLMLVSVENDSIDFSTLDSSLILYVSC
CCCCHHHCCEEEEECCCCCCEEECCCEEEEECCCEEEEEECCCCCCHHHHCCCEEEEEEH
DLIKDYLHFLKKDLTHYTPVSRGFPPYMIEPCRTPYVFREAASHSVMRETNEIEFERKRS
HHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LTFAALSIFLNNRSFIPFLMRMVRSNISSNVYNMIQNDIHKPWSLTAVASCLCLSPSSLK
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHH
KKLKNEQTSYSKIVTDCRMRYAVEQLLIFNKNISQVSTLCGYSSTSYFISVFKEYYGVTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCH
LNYVHRYRDGGILP
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]