Click here to switch to the map view.

The map label for this gene is intZ [H]

Identifier: 238921021

GI number: 238921021

Start: 3032118

End: 3033320

Strand: Reverse

Name: intZ [H]

Synonym: NT01EI_3151

Alternate gene names: 238921021

Gene position: 3033320-3032118 (Counterclockwise)

Preceding gene: 238921022

Following gene: 238921014

Centisome position: 79.57

GC content: 48.13

Gene sequence:

>1203_bases
ATGCTGACAGATAGCAAACTGAAAAACCTCAAGGCGCAGGACAAACTGTACAAGATTTCAGACCGCGATGGGTTGTATAT
CACTATATCTCCCAAAGGGTTAGTGACGTTTCGCTACGATTACCGGATTCATGGTCGGCGTGAGACTCTGACGATTGGTC
GCTATGGTGCTGACGGTATTTCTCTGGCCCAGGCGCGTGAAAAGTTGATGGAGGCAAAAAAGCAGGTAAACGCAGGTATG
TCACCGTCTGCAGAGAAGCGTGACGGTAAAATGAAGCGTAAAAGTGAGAGGACGTTTTACGATTTTACCGTCAGCTATAT
GAAACATACCCGACTGGCCGACAGCACCAGAGCGATGAAGCAAAGTATTATTGACCGGGATATCACGCCTGTATGGGGAC
GAAAGCTACTGTCAGAGATAACGGCTCCAGCCTTACGCGAGTATTGTGACAGGGTAAAACGTCGGGGTGCGCCAGCGACA
GCGATCCAGGTCCGTAATATTGTTAGTGCGGTGTTTAAGTTTGCAGCTCTGCATGGTGATTACTATCTCAACCCGGCTGA
AGACGTTCTGCCAGCCTCTATTGCCACGTTTGAACCCCGTGACAGGGCGCTTAAGCCAGAAGAGATAGGCTGTTTTTTCA
ATCAGCTTGAACGGACGGGAACATTACCCACTATAAAGCTGGCCATTAAACTGGTTTTGTTAACGATGGTGCGTAAGAGT
GAATTGCTTAATGCATCATGGAGTGAAATCGATTTCAGTACAGGTGTATGGACCATTGAAAGTAACCGGATGAAAGGTGA
CAGAGATCATAATGTTTATCTATCCCGGCAGGCTCAGGATATTCTGGTAGCCTTGAAAATGTGTGCTGGTAGTTCTGAAT
GGGTGCTGCCATCATGCAATCAGTCCTCTCATAAAACCATGTCGGCAGCAACCCTGAACAGAGTGATTAACCTTACGGTT
AAGCAGGCGCAGGAGCGGGGGATCAAATTAGCGTCATTTTCTGTCCATGATATGCGTCGAACGGCATCTACGTTATTACA
CGAGGCGGGATTTAACTCCGACTGGATAGAAAAATGTCTGGCGCATGAAGAAAGAAGCATTCGCGCCGTTTATAACAAAG
CGGAATACGCAGAGCAGCGGCGTGACATGTTGCAGCAGTGGGCGGATATGGTTGATGGGTGGATCACTAAATACCGCCCG
TGA

Upstream 100 bases:

>100_bases
AATTGACGGTATAATAATTTTCAGCTCAGTATCACACTCCATTTTACCGTCAGGTTTTAGTCTGTGGTGACGGTAAATTT
TTACTATGGAGGATGCAGGG

Downstream 100 bases:

>100_bases
GTGCTATTCCTGGATTTTTGCGCCAGAGCGTTTTGGGGCCTTGGTCAGGTTCTGTCGCGCGGCGTCCTGAGCAGGAGAAT
GGTTGTTTTTTTGCTGTGTT

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MLTDSKLKNLKAQDKLYKISDRDGLYITISPKGLVTFRYDYRIHGRRETLTIGRYGADGISLAQAREKLMEAKKQVNAGM
SPSAEKRDGKMKRKSERTFYDFTVSYMKHTRLADSTRAMKQSIIDRDITPVWGRKLLSEITAPALREYCDRVKRRGAPAT
AIQVRNIVSAVFKFAALHGDYYLNPAEDVLPASIATFEPRDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKS
ELLNASWSEIDFSTGVWTIESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCNQSSHKTMSAATLNRVINLTV
KQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCLAHEERSIRAVYNKAEYAEQRRDMLQQWADMVDGWITKYRP

Sequences:

>Translated_400_residues
MLTDSKLKNLKAQDKLYKISDRDGLYITISPKGLVTFRYDYRIHGRRETLTIGRYGADGISLAQAREKLMEAKKQVNAGM
SPSAEKRDGKMKRKSERTFYDFTVSYMKHTRLADSTRAMKQSIIDRDITPVWGRKLLSEITAPALREYCDRVKRRGAPAT
AIQVRNIVSAVFKFAALHGDYYLNPAEDVLPASIATFEPRDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKS
ELLNASWSEIDFSTGVWTIESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCNQSSHKTMSAATLNRVINLTV
KQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCLAHEERSIRAVYNKAEYAEQRRDMLQQWADMVDGWITKYRP
>Mature_400_residues
MLTDSKLKNLKAQDKLYKISDRDGLYITISPKGLVTFRYDYRIHGRRETLTIGRYGADGISLAQAREKLMEAKKQVNAGM
SPSAEKRDGKMKRKSERTFYDFTVSYMKHTRLADSTRAMKQSIIDRDITPVWGRKLLSEITAPALREYCDRVKRRGAPAT
AIQVRNIVSAVFKFAALHGDYYLNPAEDVLPASIATFEPRDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKS
ELLNASWSEIDFSTGVWTIESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCNQSSHKTMSAATLNRVINLTV
KQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCLAHEERSIRAVYNKAEYAEQRRDMLQQWADMVDGWITKYRP

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI145693166, Length=409, Percent_Identity=31.5403422982885, Blast_Score=161, Evalue=8e-41,
Organism=Escherichia coli, GI1788690, Length=397, Percent_Identity=28.7153652392947, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1788974, Length=397, Percent_Identity=29.2191435768262, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45656; Mature: 45656

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDSKLKNLKAQDKLYKISDRDGLYITISPKGLVTFRYDYRIHGRRETLTIGRYGADGI
CCCCHHHHCCHHHHHEEEECCCCCEEEEECCCEEEEEEEEEEECCCCEEEEEECCCCCCH
SLAQAREKLMEAKKQVNAGMSPSAEKRDGKMKRKSERTFYDFTVSYMKHTRLADSTRAMK
HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
QSIIDRDITPVWGRKLLSEITAPALREYCDRVKRRGAPATAIQVRNIVSAVFKFAALHGD
HHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
YYLNPAEDVLPASIATFEPRDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKS
CCCCCHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ELLNASWSEIDFSTGVWTIESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCN
HHHCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCC
QSSHKTMSAATLNRVINLTVKQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHH
AHEERSIRAVYNKAEYAEQRRDMLQQWADMVDGWITKYRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTDSKLKNLKAQDKLYKISDRDGLYITISPKGLVTFRYDYRIHGRRETLTIGRYGADGI
CCCCHHHHCCHHHHHEEEECCCCCEEEEECCCEEEEEEEEEEECCCCEEEEEECCCCCCH
SLAQAREKLMEAKKQVNAGMSPSAEKRDGKMKRKSERTFYDFTVSYMKHTRLADSTRAMK
HHHHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
QSIIDRDITPVWGRKLLSEITAPALREYCDRVKRRGAPATAIQVRNIVSAVFKFAALHGD
HHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
YYLNPAEDVLPASIATFEPRDRALKPEEIGCFFNQLERTGTLPTIKLAIKLVLLTMVRKS
CCCCCHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ELLNASWSEIDFSTGVWTIESNRMKGDRDHNVYLSRQAQDILVALKMCAGSSEWVLPSCN
HHHCCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCC
QSSHKTMSAATLNRVINLTVKQAQERGIKLASFSVHDMRRTASTLLHEAGFNSDWIEKCL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHH
AHEERSIRAVYNKAEYAEQRRDMLQQWADMVDGWITKYRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]