| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238921014
Identifier: 238921014
GI number: 238921014
Start: 3026323
End: 3026997
Strand: Reverse
Name: 238921014
Synonym: NT01EI_3144
Alternate gene names: NA
Gene position: 3026997-3026323 (Counterclockwise)
Preceding gene: 238921021
Following gene: 238921013
Centisome position: 79.4
GC content: 32.44
Gene sequence:
>675_bases ATGTTGGGGTTCATGATGGCGGTGGTAGCCGCAGCAGTTGGATATATCGGTATGAAAGACTCTGCATCCAGAAAATATCA TAAGCCTGTTGTTATTCATTTGTTATCTATTTTGATGTCTTTATTTTCTTTTTTTCTTGTTGGTATCCCGTCTATAGCAG GTGATTATCTATGGGGTGGGATATTTATTTTAATTTTATATTGTTGTGCATCGATGAAAGTATTACCACAACTTGTTAAT AACCAACAGTATGATAAAAAAAATAGAAGTAATCTATTCGTATGGGAAAAATATCGCACGCGACAAAAGCAAAAGGCTAA ATCAAAAGCGGAAAAGTTGAATGATGAGATTATCAGTCTCAGAAAATTAAGTGATAAAAATAGACAAGCTAGCTATGATA TTACGACTTTTTCTGATGAGCATATGGTTAAAAACAAAACAACAATAAGAAAGAAAAAAATCAACAAGAAGAAAATACTA GAATCCGGGCGAATTTCTTTTGACTATATTGATGTTGACGGTAATTATACTTCTCGTGAGATAGATATAAGTGATGTTGA TAGTGTATATTTAAAAGGATACTGCTATTTATCTAATGGGTATAGGACGTTCCGTATTGATAGAATTCAAGGTGATATTG TTTGTCGAGATACAGGTGAGATTTTATGCGATTAA
Upstream 100 bases:
>100_bases ACCGGGCTTCAACACCTGAACATCAGTCCACCCTTGATACGGTTAGCATTGCGCTTGCGCAATCGGGGGGAATAGGTTCA AAGATTAAGGGAGCATAAAA
Downstream 100 bases:
>100_bases CAAAAGCTGTGAAAGCTTTTTATTATTTTCTTCAGGATAAAGAGCGCTCTAACTCTTCTTTTAGTGAGAGTGAAATATTA GAAGTTACAAAGTGGAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 224; Mature: 224
Protein sequence:
>224_residues MLGFMMAVVAAAVGYIGMKDSASRKYHKPVVIHLLSILMSLFSFFLVGIPSIAGDYLWGGIFILILYCCASMKVLPQLVN NQQYDKKNRSNLFVWEKYRTRQKQKAKSKAEKLNDEIISLRKLSDKNRQASYDITTFSDEHMVKNKTTIRKKKINKKKIL ESGRISFDYIDVDGNYTSREIDISDVDSVYLKGYCYLSNGYRTFRIDRIQGDIVCRDTGEILCD
Sequences:
>Translated_224_residues MLGFMMAVVAAAVGYIGMKDSASRKYHKPVVIHLLSILMSLFSFFLVGIPSIAGDYLWGGIFILILYCCASMKVLPQLVN NQQYDKKNRSNLFVWEKYRTRQKQKAKSKAEKLNDEIISLRKLSDKNRQASYDITTFSDEHMVKNKTTIRKKKINKKKIL ESGRISFDYIDVDGNYTSREIDISDVDSVYLKGYCYLSNGYRTFRIDRIQGDIVCRDTGEILCD >Mature_224_residues MLGFMMAVVAAAVGYIGMKDSASRKYHKPVVIHLLSILMSLFSFFLVGIPSIAGDYLWGGIFILILYCCASMKVLPQLVN NQQYDKKNRSNLFVWEKYRTRQKQKAKSKAEKLNDEIISLRKLSDKNRQASYDITTFSDEHMVKNKTTIRKKKINKKKIL ESGRISFDYIDVDGNYTSREIDISDVDSVYLKGYCYLSNGYRTFRIDRIQGDIVCRDTGEILCD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25793; Mature: 25793
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGFMMAVVAAAVGYIGMKDSASRKYHKPVVIHLLSILMSLFSFFLVGIPSIAGDYLWGG CHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH IFILILYCCASMKVLPQLVNNQQYDKKNRSNLFVWEKYRTRQKQKAKSKAEKLNDEIISL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH RKLSDKNRQASYDITTFSDEHMVKNKTTIRKKKINKKKILESGRISFDYIDVDGNYTSRE HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCCE IDISDVDSVYLKGYCYLSNGYRTFRIDRIQGDIVCRDTGEILCD ECHHHHCCEEEEEEEEEECCEEEEEEEEECCCEEEECCCCCCCC >Mature Secondary Structure MLGFMMAVVAAAVGYIGMKDSASRKYHKPVVIHLLSILMSLFSFFLVGIPSIAGDYLWGG CHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH IFILILYCCASMKVLPQLVNNQQYDKKNRSNLFVWEKYRTRQKQKAKSKAEKLNDEIISL HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH RKLSDKNRQASYDITTFSDEHMVKNKTTIRKKKINKKKILESGRISFDYIDVDGNYTSRE HHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEECCCCCCCCE IDISDVDSVYLKGYCYLSNGYRTFRIDRIQGDIVCRDTGEILCD ECHHHHCCEEEEEEEEEECCEEEEEEEEECCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA