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The map label for this gene is rna [C]

Identifier: 238920956

GI number: 238920956

Start: 2973704

End: 2974429

Strand: Reverse

Name: rna [C]

Synonym: NT01EI_3086

Alternate gene names: 238920956

Gene position: 2974429-2973704 (Counterclockwise)

Preceding gene: 238920958

Following gene: 238920954

Centisome position: 78.02

GC content: 52.2

Gene sequence:

>726_bases
GTGCTACGAATTAAATATTATCTGTTACTGATCCTACTCTGCTTGTCCGGCTCTCTGTATGCGCTGGATAAAGATGAGCA
GGATCTCCCAGGCTTGCCCAGCGGCGCCTACGACTACCTGGTTTACGCCGTCACTTGGCAGCCCACGTTTTGTCTGCTGA
ATCCGGCTGCACCGGGTTGTAAAGCCTACCGGGCCGACTTTTATACCCATGGGATCTGGCCCTATTTTCTCTCTACCGAG
CAGAGCGCTAACCGTCATCCCTCCAACTGTATTCAGTCACCCGGCTGCCCTACGGGCAGCCGTTGCACATTGTTACCTGA
GGTGATGGACTCCCTGCTGAAGAATACGGCGTTCCGAAAAATTGTCAGCGCCCAGCCCGAAGGGCTGATGAAGCACGAGT
GGAGTAAACACGGTACCTGCCTAGGCAGCGATCAGCGGGAGTATTTTACCCGCTTTATACAGCTGAGATCGACGGTGAAA
TATGATGATAAATTCAAAAAACACATGGGGCAATCCGTCTCTCTGCATACTCTGCGCACCTGGTTCCCAGATAACGTTCG
CTTCCGCTGTACAACCCACGGCGACAAGCACTATTTTTTTGAGGCATTTTATCTACTGGATAAACATGGCATGCCAGATA
ACCGTGATACCAGGCTACAGATAGGTGAACCCTGCCCGTTAGATGCTATCTGGATCCCCGCTCCGCAGTCGCTCGATGCA
CGCTAA

Upstream 100 bases:

>100_bases
CTATGATTCTATCAAGGCGTGGAGGATTCGATCGCGTGAGAGCCTGCGCCCCGCTATACCCAAAATACGCTATACGGCTA
TCTGACGGAGGGCGACGACT

Downstream 100 bases:

>100_bases
GAGGTACCGATCCCCATAACGCCACGCCGGACGACACCGGCGTGGAATACTCTTCAGCGCAGGGCGGCCTGTATGTCGTA
GCCCAGGCACCCTTGCACCA

Product: ribonuclease T2 family

Products: 3'- Phosphomononucleotides; 3'-Phosphooligonucleotides [C]

Alternate protein names: Ribonuclease Protein

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MLRIKYYLLLILLCLSGSLYALDKDEQDLPGLPSGAYDYLVYAVTWQPTFCLLNPAAPGCKAYRADFYTHGIWPYFLSTE
QSANRHPSNCIQSPGCPTGSRCTLLPEVMDSLLKNTAFRKIVSAQPEGLMKHEWSKHGTCLGSDQREYFTRFIQLRSTVK
YDDKFKKHMGQSVSLHTLRTWFPDNVRFRCTTHGDKHYFFEAFYLLDKHGMPDNRDTRLQIGEPCPLDAIWIPAPQSLDA
R

Sequences:

>Translated_241_residues
MLRIKYYLLLILLCLSGSLYALDKDEQDLPGLPSGAYDYLVYAVTWQPTFCLLNPAAPGCKAYRADFYTHGIWPYFLSTE
QSANRHPSNCIQSPGCPTGSRCTLLPEVMDSLLKNTAFRKIVSAQPEGLMKHEWSKHGTCLGSDQREYFTRFIQLRSTVK
YDDKFKKHMGQSVSLHTLRTWFPDNVRFRCTTHGDKHYFFEAFYLLDKHGMPDNRDTRLQIGEPCPLDAIWIPAPQSLDA
R
>Mature_241_residues
MLRIKYYLLLILLCLSGSLYALDKDEQDLPGLPSGAYDYLVYAVTWQPTFCLLNPAAPGCKAYRADFYTHGIWPYFLSTE
QSANRHPSNCIQSPGCPTGSRCTLLPEVMDSLLKNTAFRKIVSAQPEGLMKHEWSKHGTCLGSDQREYFTRFIQLRSTVK
YDDKFKKHMGQSVSLHTLRTWFPDNVRFRCTTHGDKHYFFEAFYLLDKHGMPDNRDTRLQIGEPCPLDAIWIPAPQSLDA
R

Specific function: One Of The Few RNAses That Cleaves The Phosphodiester Bond Between Any Two Nucleotide. Shows A Preference For Cytidylic Or Guanylic Acid. [C]

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Periplasmic Protein And Cytoplasm. [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.27.6 [C]

Molecular weight: Translated: 27697; Mature: 27697

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS00531 RNASE_T2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRIKYYLLLILLCLSGSLYALDKDEQDLPGLPSGAYDYLVYAVTWQPTFCLLNPAAPGC
CEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCC
KAYRADFYTHGIWPYFLSTEQSANRHPSNCIQSPGCPTGSRCTLLPEVMDSLLKNTAFRK
HHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
IVSAQPEGLMKHEWSKHGTCLGSDQREYFTRFIQLRSTVKYDDKFKKHMGQSVSLHTLRT
HHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHEE
WFPDNVRFRCTTHGDKHYFFEAFYLLDKHGMPDNRDTRLQIGEPCPLDAIWIPAPQSLDA
CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCC
R
C
>Mature Secondary Structure
MLRIKYYLLLILLCLSGSLYALDKDEQDLPGLPSGAYDYLVYAVTWQPTFCLLNPAAPGC
CEEHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCEEEEEEEEECCEEEEECCCCCCC
KAYRADFYTHGIWPYFLSTEQSANRHPSNCIQSPGCPTGSRCTLLPEVMDSLLKNTAFRK
HHHHHHHHHCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHH
IVSAQPEGLMKHEWSKHGTCLGSDQREYFTRFIQLRSTVKYDDKFKKHMGQSVSLHTLRT
HHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEHEE
WFPDNVRFRCTTHGDKHYFFEAFYLLDKHGMPDNRDTRLQIGEPCPLDAIWIPAPQSLDA
CCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCEEEECCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Nucleotides [C]

Specific reaction: Endonucleolytic Cleavage With 2',3'-Cyclic Phosphate Intermediates. [C]

General reaction: Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA