Click here to switch to the map view.

The map label for this gene is ybdN [H]

Identifier: 238920853

GI number: 238920853

Start: 2869877

End: 2871085

Strand: Reverse

Name: ybdN [H]

Synonym: NT01EI_2979

Alternate gene names: 238920853

Gene position: 2871085-2869877 (Counterclockwise)

Preceding gene: 238920854

Following gene: 238920852

Centisome position: 75.31

GC content: 41.03

Gene sequence:

>1209_bases
ATGGTTAAAATTAATATTAATGAAAGTGTGCTATTTGCTGCAACGGAGAGAATTGACTGGGCTTTCGACAACTTTTCTCA
TGTTTGTATATCATTTTCAGGGGGGAAGGATTCCACCGTATTACTCCATTTGGCTGGCTACATTGCCAGAAAGAAAAAAA
AGAAATTCAGCGTGTTGTTTATTGACTGGGAAGTGCAGTTTAATTACACAATAAAACATGTTGAGAGTATGCGTGAGTTA
TATAAGGATATTGTAAGCAATTTTTATTGGGTTGCTCTACCGCTCAAAACAGTGAGCGGCGTATCGCGCTTCCAGCCTGA
GTGGCTATGCTGGGATCCCGCTGTTTCGTGGGTTAGAGTCCCCCCCATTTTTGCTATTACTGAGTATGGCTATTTCCCAT
TTTATAAATATGGCATGACATTTGAGGAGTTTGTTCCTGAGTTCTCCGGTTGGTTGGCAGGGCATAATTCTTTAATAACG
TTAATCGGTGTTAGGACCGATGAGTCACTGAGTCGATATATGGGGCTGGTCTCCAGACGGAAGCTAAGGTATGCAGATGA
TAAACCCTGGACAACCGCATCGCTAGATGGATTCTATTATACTGGATATCCTCTATACGATTGGAAAGCAAAAGATATAT
GGATATATCATAAAAAAACGAAATTACCATACAATGAATTATATGATTTGATGTACCAGGCTGGCGTCCCAATGAAATCG
ATGCGGGTATGTGAACCATTTGGCCCTGAGCAGCGTAAAGGTTTATGGCTATATCATGTTTTGGAGCCTGATACCTGGCG
TCTGGTATGCACCAGAGTTGCGGGTGCACATAGTGGTGCGATATATGGTAACCAAAGCGGGGATTTTTATGGGTTAAGAA
AGATGAGTAAACCAAGTGATTTATCCTGGCGAGACTATGCTTTATTCTTACTTGATAACATGCCACCGTCAACGGCTGAA
AACTATCGTTGTAAGATATCCATCTACTTGCAATGGTATCAGGGGCAGGGGTATCCAATAGATATTCCAGATCATCAAGA
TAAAGATCTGGGGGTTAAAGATATTCCCTCCTGGAGACGAATTTGCAAGGTAATAATAAAAAATGATTATTGGTGTAAAA
TGCTATCCTTTAGCCACAGGCCTAATCATTTATATGATAAATACACTAGCGCAACACAAGAGAAAAGGGTAAAGCGGAGG
GTGCTGTGA

Upstream 100 bases:

>100_bases
AATAAAGATCTGTTTAAGAAATTTTAATCTACAAAATAAAATTGCAACAAATCTGTTTGCATGATATTAATATTAATTAT
TGTGGTGTATAAGGATATGT

Downstream 100 bases:

>100_bases
ACGATTTTGATAAAATAATTGTTAGTATAAAAAATTTTTTTTCACAGGAATTTCTGTTTGATGAAAAAGTAGCGGCGTTA
AATTTAATGCGCGAGGCGCT

Product: IbrA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MVKININESVLFAATERIDWAFDNFSHVCISFSGGKDSTVLLHLAGYIARKKKKKFSVLFIDWEVQFNYTIKHVESMREL
YKDIVSNFYWVALPLKTVSGVSRFQPEWLCWDPAVSWVRVPPIFAITEYGYFPFYKYGMTFEEFVPEFSGWLAGHNSLIT
LIGVRTDESLSRYMGLVSRRKLRYADDKPWTTASLDGFYYTGYPLYDWKAKDIWIYHKKTKLPYNELYDLMYQAGVPMKS
MRVCEPFGPEQRKGLWLYHVLEPDTWRLVCTRVAGAHSGAIYGNQSGDFYGLRKMSKPSDLSWRDYALFLLDNMPPSTAE
NYRCKISIYLQWYQGQGYPIDIPDHQDKDLGVKDIPSWRRICKVIIKNDYWCKMLSFSHRPNHLYDKYTSATQEKRVKRR
VL

Sequences:

>Translated_402_residues
MVKININESVLFAATERIDWAFDNFSHVCISFSGGKDSTVLLHLAGYIARKKKKKFSVLFIDWEVQFNYTIKHVESMREL
YKDIVSNFYWVALPLKTVSGVSRFQPEWLCWDPAVSWVRVPPIFAITEYGYFPFYKYGMTFEEFVPEFSGWLAGHNSLIT
LIGVRTDESLSRYMGLVSRRKLRYADDKPWTTASLDGFYYTGYPLYDWKAKDIWIYHKKTKLPYNELYDLMYQAGVPMKS
MRVCEPFGPEQRKGLWLYHVLEPDTWRLVCTRVAGAHSGAIYGNQSGDFYGLRKMSKPSDLSWRDYALFLLDNMPPSTAE
NYRCKISIYLQWYQGQGYPIDIPDHQDKDLGVKDIPSWRRICKVIIKNDYWCKMLSFSHRPNHLYDKYTSATQEKRVKRR
VL
>Mature_402_residues
MVKININESVLFAATERIDWAFDNFSHVCISFSGGKDSTVLLHLAGYIARKKKKKFSVLFIDWEVQFNYTIKHVESMREL
YKDIVSNFYWVALPLKTVSGVSRFQPEWLCWDPAVSWVRVPPIFAITEYGYFPFYKYGMTFEEFVPEFSGWLAGHNSLIT
LIGVRTDESLSRYMGLVSRRKLRYADDKPWTTASLDGFYYTGYPLYDWKAKDIWIYHKKTKLPYNELYDLMYQAGVPMKS
MRVCEPFGPEQRKGLWLYHVLEPDTWRLVCTRVAGAHSGAIYGNQSGDFYGLRKMSKPSDLSWRDYALFLLDNMPPSTAE
NYRCKISIYLQWYQGQGYPIDIPDHQDKDLGVKDIPSWRRICKVIIKNDYWCKMLSFSHRPNHLYDKYTSATQEKRVKRR
VL

Specific function: Unknown

COG id: COG3969

COG function: function code R; Predicted phosphoadenosine phosphosulfate sulfotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786818, Length=400, Percent_Identity=53.5, Blast_Score=462, Evalue=1e-131,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021845
- InterPro:   IPR002500
- InterPro:   IPR014729 [H]

Pfam domain/function: PF11922 DUF3440; PF01507 PAPS_reduct [H]

EC number: NA

Molecular weight: Translated: 47341; Mature: 47341

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKININESVLFAATERIDWAFDNFSHVCISFSGGKDSTVLLHLAGYIARKKKKKFSVLF
CEEEEECCEEEEEEECCCEEECCCCEEEEEEECCCCCCEEEEEHHHHHHHHCCCCEEEEE
IDWEVQFNYTIKHVESMRELYKDIVSNFYWVALPLKTVSGVSRFQPEWLCWDPAVSWVRV
EEEEEEEEEHHHHHHHHHHHHHHHHCCEEEEEEEHHHHCCHHHCCCCEEEECCCCCEEEC
PPIFAITEYGYFPFYKYGMTFEEFVPEFSGWLAGHNSLITLIGVRTDESLSRYMGLVSRR
CCEEEEECCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
KLRYADDKPWTTASLDGFYYTGYPLYDWKAKDIWIYHKKTKLPYNELYDLMYQAGVPMKS
HHCCCCCCCCEEEECCCEEEECEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHH
MRVCEPFGPEQRKGLWLYHVLEPDTWRLVCTRVAGAHSGAIYGNQSGDFYGLRKMSKPSD
HEECCCCCCCCCCCEEEEEEECCCCEEEEEEHHCCCCCCEEEECCCCCEEEECCCCCCCC
LSWRDYALFLLDNMPPSTAENYRCKISIYLQWYQGQGYPIDIPDHQDKDLGVKDIPSWRR
CCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHH
ICKVIIKNDYWCKMLSFSHRPNHLYDKYTSATQEKRVKRRVL
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKININESVLFAATERIDWAFDNFSHVCISFSGGKDSTVLLHLAGYIARKKKKKFSVLF
CEEEEECCEEEEEEECCCEEECCCCEEEEEEECCCCCCEEEEEHHHHHHHHCCCCEEEEE
IDWEVQFNYTIKHVESMRELYKDIVSNFYWVALPLKTVSGVSRFQPEWLCWDPAVSWVRV
EEEEEEEEEHHHHHHHHHHHHHHHHCCEEEEEEEHHHHCCHHHCCCCEEEECCCCCEEEC
PPIFAITEYGYFPFYKYGMTFEEFVPEFSGWLAGHNSLITLIGVRTDESLSRYMGLVSRR
CCEEEEECCCCCCEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHH
KLRYADDKPWTTASLDGFYYTGYPLYDWKAKDIWIYHKKTKLPYNELYDLMYQAGVPMKS
HHCCCCCCCCEEEECCCEEEECEEEECCCCCEEEEEEECCCCCHHHHHHHHHHCCCCHHH
MRVCEPFGPEQRKGLWLYHVLEPDTWRLVCTRVAGAHSGAIYGNQSGDFYGLRKMSKPSD
HEECCCCCCCCCCCEEEEEEECCCCEEEEEEHHCCCCCCEEEECCCCCEEEECCCCCCCC
LSWRDYALFLLDNMPPSTAENYRCKISIYLQWYQGQGYPIDIPDHQDKDLGVKDIPSWRR
CCCCEEEEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEECCCCCCCCCCCCCCCHHHHH
ICKVIIKNDYWCKMLSFSHRPNHLYDKYTSATQEKRVKRRVL
HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]