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The map label for this gene is ybgC [H]

Identifier: 238920742

GI number: 238920742

Start: 2748796

End: 2749200

Strand: Reverse

Name: ybgC [H]

Synonym: NT01EI_2861

Alternate gene names: 238920742

Gene position: 2749200-2748796 (Counterclockwise)

Preceding gene: 238920743

Following gene: 238920741

Centisome position: 72.11

GC content: 53.58

Gene sequence:

>405_bases
GTGAGTCATATGGTATTCCAATGGCCGGTACGGGTGTACTTTGAGGACACCGATGCCGGGGGTGTAGTCTATCACGCACG
CTACATCGCCTTTTATGAAAGAGCGCGCACGGAGATGCTGCGTCAACATCATTTTAGTCAGCAACAGCTGCTGGCTGAGC
ATGTCGCTTTTGCGGTCCGTCGCATGACCGTGGACTATCTGGCTCCCGCCCGACTGGACGATCTGTTGGTGGTGGAGAGC
GAAATTTCCGCGCTGCGGGGGGCTTCCCTTACGTTTGCGCAGCGCATTGTCAATTCTGAAGGCTTGGTTCTCAGTCGGGC
CGATGTGCTGATTGCATGTATCGATCAAAATCTAATGAAGCCGATTGCGCTTCCAAAGTCTATTGTCGCGGAGTTTAAGC
AGTGA

Upstream 100 bases:

>100_bases
GTGACCCATAATTATTTTAGCTCTCGGGTTTATCCCCCATTCCAAACCCCATTTCAGTTGCGTATAGTATCCGCGTTGTT
AAGCTATACTGGGATGTAGA

Downstream 100 bases:

>100_bases
CTGACATGAATATTCTGGATTTATTCCTGAAAGCAAGTCTGCTGGTAAAGCTTATCATGCTGGTATTGATATGCTTTTCG
GTTGCCTCCTGGGCGATCAT

Product: acyl-CoA thioester hydrolase YbgC

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSHMVFQWPVRVYFEDTDAGGVVYHARYIAFYERARTEMLRQHHFSQQQLLAEHVAFAVRRMTVDYLAPARLDDLLVVES
EISALRGASLTFAQRIVNSEGLVLSRADVLIACIDQNLMKPIALPKSIVAEFKQ

Sequences:

>Translated_134_residues
MSHMVFQWPVRVYFEDTDAGGVVYHARYIAFYERARTEMLRQHHFSQQQLLAEHVAFAVRRMTVDYLAPARLDDLLVVES
EISALRGASLTFAQRIVNSEGLVLSRADVLIACIDQNLMKPIALPKSIVAEFKQ
>Mature_133_residues
SHMVFQWPVRVYFEDTDAGGVVYHARYIAFYERARTEMLRQHHFSQQQLLAEHVAFAVRRMTVDYLAPARLDDLLVVESE
ISALRGASLTFAQRIVNSEGLVLSRADVLIACIDQNLMKPIALPKSIVAEFKQ

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=134, Percent_Identity=69.4029850746269, Blast_Score=206, Evalue=4e-55,
Organism=Escherichia coli, GI1786647, Length=113, Percent_Identity=34.5132743362832, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15309; Mature: 15178

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHMVFQWPVRVYFEDTDAGGVVYHARYIAFYERARTEMLRQHHFSQQQLLAEHVAFAVR
CCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RMTVDYLAPARLDDLLVVESEISALRGASLTFAQRIVNSEGLVLSRADVLIACIDQNLMK
HHHHHHHCCCCCCHHEEEHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
PIALPKSIVAEFKQ
HHCCCHHHHHHCCC
>Mature Secondary Structure 
SHMVFQWPVRVYFEDTDAGGVVYHARYIAFYERARTEMLRQHHFSQQQLLAEHVAFAVR
CCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
RMTVDYLAPARLDDLLVVESEISALRGASLTFAQRIVNSEGLVLSRADVLIACIDQNLMK
HHHHHHHCCCCCCHHEEEHHHHHHHCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
PIALPKSIVAEFKQ
HHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]