Click here to switch to the map view.

The map label for this gene is ygaP [H]

Identifier: 238920672

GI number: 238920672

Start: 2678312

End: 2678842

Strand: Reverse

Name: ygaP [H]

Synonym: NT01EI_2785

Alternate gene names: 238920672

Gene position: 2678842-2678312 (Counterclockwise)

Preceding gene: 238920673

Following gene: 238920670

Centisome position: 70.27

GC content: 64.6

Gene sequence:

>531_bases
ATGCAGGTGAATACCCTTACACCGCGTCAGGCCAGCGAGATGCTGGCGCAGGGCGCCCGGCTGATCGATATCCGCGATGC
GCAGGAGTATGCGCGTGAACACGTTGCCGGAGCGACGCTGGCGCCGCTCTCCGACTGGCAGAAGGGGATGCCGCTGACGC
CGTCGCCGTCGGGAGCGGTGATTTTTATGTGTCAGTCCGGAATGCGTTCGGACAGCAACGCGGCGCTGCTTGTCTCCCGC
GTGGCGCCGGGCCGGGCCTATGTGATGCAGGGGGGGCTGGCGGCCTGGAAGCAGGCCGGTCTGTCGACGGTGGAGGATCG
GCGTCAACCGTTACCGCTGATGCGTCAGGTGCAGATCGCCGCCGGCTCATTGGTGTTATTGGGGGTGATTCTGGGGTATG
GCGTGTCGGCGGGCTTTTTCCTGCTCTCCGCTTTTGTCGGCGCCGGTCTGCTGTTTGCCGGGATCAGCGGCTTTTGCGGT
ATGGCGCGTCTCCTGATGAAGATGCCGTGGAACCGTCGCCTGATCCAGTGA

Upstream 100 bases:

>100_bases
GCGGGAGGGCACCCACGTACTCTATATGATCCAAAATCCGGCGATCGCCCAGATCATCGCCACGCTCAAAACCTACTATT
GCCCATAACGGGAGGCAGCT

Downstream 100 bases:

>100_bases
TACGTTCAGGCCGCCCAGAGAACCATGGGTAGCCTGAGCGCGATTAAGCCCCCTTGGTGGGTATCGGGAAAGGTGCTCTC
GCCGCGGTGTACAGGCGGAT

Product: inner membrane protein YgaP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MQVNTLTPRQASEMLAQGARLIDIRDAQEYAREHVAGATLAPLSDWQKGMPLTPSPSGAVIFMCQSGMRSDSNAALLVSR
VAPGRAYVMQGGLAAWKQAGLSTVEDRRQPLPLMRQVQIAAGSLVLLGVILGYGVSAGFFLLSAFVGAGLLFAGISGFCG
MARLLMKMPWNRRLIQ

Sequences:

>Translated_176_residues
MQVNTLTPRQASEMLAQGARLIDIRDAQEYAREHVAGATLAPLSDWQKGMPLTPSPSGAVIFMCQSGMRSDSNAALLVSR
VAPGRAYVMQGGLAAWKQAGLSTVEDRRQPLPLMRQVQIAAGSLVLLGVILGYGVSAGFFLLSAFVGAGLLFAGISGFCG
MARLLMKMPWNRRLIQ
>Mature_176_residues
MQVNTLTPRQASEMLAQGARLIDIRDAQEYAREHVAGATLAPLSDWQKGMPLTPSPSGAVIFMCQSGMRSDSNAALLVSR
VAPGRAYVMQGGLAAWKQAGLSTVEDRRQPLPLMRQVQIAAGSLVLLGVILGYGVSAGFFLLSAFVGAGLLFAGISGFCG
MARLLMKMPWNRRLIQ

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To Synechocystis PCC 6803 slr1261 [H]

Homologues:

Organism=Escherichia coli, GI1789022, Length=174, Percent_Identity=58.0459770114943, Blast_Score=206, Evalue=7e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021309
- InterPro:   IPR001763 [H]

Pfam domain/function: PF11127 DUF2892; PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 18806; Mature: 18806

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: PS50206 RHODANESE_3 ; PS00287 CYSTATIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVNTLTPRQASEMLAQGARLIDIRDAQEYAREHVAGATLAPLSDWQKGMPLTPSPSGAV
CCCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCE
IFMCQSGMRSDSNAALLVSRVAPGRAYVMQGGLAAWKQAGLSTVEDRRQPLPLMRQVQIA
EEEECCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHCCHHHHHHCCCCHHHHHHHHH
AGSLVLLGVILGYGVSAGFFLLSAFVGAGLLFAGISGFCGMARLLMKMPWNRRLIQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MQVNTLTPRQASEMLAQGARLIDIRDAQEYAREHVAGATLAPLSDWQKGMPLTPSPSGAV
CCCCCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCE
IFMCQSGMRSDSNAALLVSRVAPGRAYVMQGGLAAWKQAGLSTVEDRRQPLPLMRQVQIA
EEEECCCCCCCCCCEEEEECCCCCHHHHHHCCHHHHHHHCCHHHHHHCCCCHHHHHHHHH
AGSLVLLGVILGYGVSAGFFLLSAFVGAGLLFAGISGFCGMARLLMKMPWNRRLIQ
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 1480493 [H]