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The map label for this gene is ycfQ [H]

Identifier: 238920506

GI number: 238920506

Start: 2506280

End: 2506951

Strand: Reverse

Name: ycfQ [H]

Synonym: NT01EI_2618

Alternate gene names: 238920506

Gene position: 2506951-2506280 (Counterclockwise)

Preceding gene: 238920507

Following gene: 238920505

Centisome position: 65.76

GC content: 60.57

Gene sequence:

>672_bases
ATGGCAATTGAACACACATCCTGTAAGCGCGCCGGACGTGGCCGTCCAAAGGTGTTTGACAGGGAAGTGGCGCTGCGTAA
GGCGCTGGAGCTGTTTTGGCGTCAGGGCTATGAGGCCACCTCTCTTGTGGATCTGGTGGAGGCTACCGGTGCCAAGGCGC
CGACGCTGTATGCCGAGTTTGAGAACAAAGAGGGGTTGTTCCGTGCCGTGGTGGAGTATTACACGGCCTGTAACGAGGAC
AAGTACGATCGTCTGCTGTTTAACGTGACGCTGCCGCTGGCTGATACGATTCACAACTACCTGAGTGTGACGGCGAACTG
TTTTACCAGCGGCGATACGCCCAGCGGCTGCTTTATCATCTGTGCTTCTATGGTGCAGACCCGCTGTTCGGATCAGGTCA
GCCAGGTGCTGAAGAGCCGTCAGTCGGTGCAGGAGGCGATGCTGGCCCGTTTTCTCCAGCTGCGCCAGGCGCAGGGGGAG
CTGCCGACGCACAGTGACGCACAGGGCTTGGCACGCTACCTGTGCTGCGTGATCCAGGGAATGTCGGTGCGCGCACGCGA
AGGGGCTGACTGCGCCGATCTGCAGGCGGTTGTGGCCGCTACCATGGAGATATGGCCTGCACTGTGCAACGCCTGCCGGC
TGCCGGAGTCCGCCAGCGGACACGCTTTGTAA

Upstream 100 bases:

>100_bases
CCTTAGCACGGTTTCACTCCCGGTGCGCCGTGGTTTGCATATTCAGGGGCTGAGGGCTACCTTTAGCGTGAGATCCAGTC
AGTGAGGTGTAGGAAAGGGA

Downstream 100 bases:

>100_bases
TACTCCCTCCCTTGTCATCGTCCGGAAAAACTGGTTAGCTAATCCCGTGTGATAGTCTGTCACCCCTATTCCAACCGCCG
TAATCTGATTACGAATGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MAIEHTSCKRAGRGRPKVFDREVALRKALELFWRQGYEATSLVDLVEATGAKAPTLYAEFENKEGLFRAVVEYYTACNED
KYDRLLFNVTLPLADTIHNYLSVTANCFTSGDTPSGCFIICASMVQTRCSDQVSQVLKSRQSVQEAMLARFLQLRQAQGE
LPTHSDAQGLARYLCCVIQGMSVRAREGADCADLQAVVAATMEIWPALCNACRLPESASGHAL

Sequences:

>Translated_223_residues
MAIEHTSCKRAGRGRPKVFDREVALRKALELFWRQGYEATSLVDLVEATGAKAPTLYAEFENKEGLFRAVVEYYTACNED
KYDRLLFNVTLPLADTIHNYLSVTANCFTSGDTPSGCFIICASMVQTRCSDQVSQVLKSRQSVQEAMLARFLQLRQAQGE
LPTHSDAQGLARYLCCVIQGMSVRAREGADCADLQAVVAATMEIWPALCNACRLPESASGHAL
>Mature_222_residues
AIEHTSCKRAGRGRPKVFDREVALRKALELFWRQGYEATSLVDLVEATGAKAPTLYAEFENKEGLFRAVVEYYTACNEDK
YDRLLFNVTLPLADTIHNYLSVTANCFTSGDTPSGCFIICASMVQTRCSDQVSQVLKSRQSVQEAMLARFLQLRQAQGEL
PTHSDAQGLARYLCCVIQGMSVRAREGADCADLQAVVAATMEIWPALCNACRLPESASGHAL

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=208, Percent_Identity=51.9230769230769, Blast_Score=220, Evalue=5e-59,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 24582; Mature: 24451

Theoretical pI: Translated: 6.49; Mature: 6.49

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
5.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIEHTSCKRAGRGRPKVFDREVALRKALELFWRQGYEATSLVDLVEATGAKAPTLYAEF
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEC
ENKEGLFRAVVEYYTACNEDKYDRLLFNVTLPLADTIHNYLSVTANCFTSGDTPSGCFII
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
CASMVQTRCSDQVSQVLKSRQSVQEAMLARFLQLRQAQGELPTHSDAQGLARYLCCVIQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
MSVRAREGADCADLQAVVAATMEIWPALCNACRLPESASGHAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AIEHTSCKRAGRGRPKVFDREVALRKALELFWRQGYEATSLVDLVEATGAKAPTLYAEF
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEEC
ENKEGLFRAVVEYYTACNEDKYDRLLFNVTLPLADTIHNYLSVTANCFTSGDTPSGCFII
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
CASMVQTRCSDQVSQVLKSRQSVQEAMLARFLQLRQAQGELPTHSDAQGLARYLCCVIQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
MSVRAREGADCADLQAVVAATMEIWPALCNACRLPESASGHAL
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]