| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is artJ [H]
Identifier: 238920412
GI number: 238920412
Start: 2423646
End: 2424380
Strand: Direct
Name: artJ [H]
Synonym: NT01EI_2522
Alternate gene names: 238920412
Gene position: 2423646-2424380 (Clockwise)
Preceding gene: 238920411
Following gene: 238920413
Centisome position: 63.57
GC content: 58.37
Gene sequence:
>735_bases ATGAAGAAGTTACTGGCCTGCGCCATCGTTGTCGCCTGCAGTTTCAGCGCCCAGGCGGCAGAGAATATCCGCTTCGCCTC ATCGGCCACCTACCCGCCGTTCGAATCCCTGGATGCCAGCAACAACATCGTCGGCTTCGACATCGATCTGGCCAAGGCGC TGTGCCAGGAGATGAAGGCGAACTGCACCTTCAACAACCAGGCGTTTGACAGCCTGATCACGGCGCTGAAGTTCAAACGC TACGACGCCGTTATCTCCGGCATGGACATCACCCCGGAGCGACAGAGGCAGGTGGCGTTCACCCAGCCTTACTACGCCAA CTCGGCGATCATCATCGCGCAGAAAGGCAAATATCACTCGATAGCCGATATGAAGGGGCTGCGGGTCGGCATGGAAAACG GGACCACTCACCAGAAGTACCTGCAGGATAAACATCCGGAGATCAAGCCGGTGGCCTATGACAGCTACCAGAATGCGATT CTGGATCTGAAAAACGGGCGTATTGATGGCGTCTTCGGCGATACCGCGGTGGTCAATGAGTGGCTGAAAAACAATCCGCA GCTGGCGGCGGTCGGCGAGTATGTCACCGATCCGCAGTACTTTGGCATCGGGCTGGGCATCGCGGTGCGCCCGGACAACC AGGCGCTGCTACATCAGCTGAATCAGGCGCTGGCCGCCATCAAGGCGAACGGCACCTATCAGAAGATCAGCGACAAGTGG TTCCCGGCGTCCTGA
Upstream 100 bases:
>100_bases GTGCCATCGCGCCGATCGTTTCCGGCACGCGCCCAAGGCAGAGGGGAATCGACAGACGCCCTCTATCCTTATCGGGATTA GCCTTGTACAGGAGTTAAGC
Downstream 100 bases:
>100_bases ATGCATCCGGTTGGCGCTCCGGGCGCGATTTGTTAGCATGTCGCCTCCGCCCGTCGGCGCCACGCCACGCTTCAGGATAC GCTATGGACTATGACCACTA
Product: arginine-binding periplasmic protein 2
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 244; Mature: 244
Protein sequence:
>244_residues MKKLLACAIVVACSFSAQAAENIRFASSATYPPFESLDASNNIVGFDIDLAKALCQEMKANCTFNNQAFDSLITALKFKR YDAVISGMDITPERQRQVAFTQPYYANSAIIIAQKGKYHSIADMKGLRVGMENGTTHQKYLQDKHPEIKPVAYDSYQNAI LDLKNGRIDGVFGDTAVVNEWLKNNPQLAAVGEYVTDPQYFGIGLGIAVRPDNQALLHQLNQALAAIKANGTYQKISDKW FPAS
Sequences:
>Translated_244_residues MKKLLACAIVVACSFSAQAAENIRFASSATYPPFESLDASNNIVGFDIDLAKALCQEMKANCTFNNQAFDSLITALKFKR YDAVISGMDITPERQRQVAFTQPYYANSAIIIAQKGKYHSIADMKGLRVGMENGTTHQKYLQDKHPEIKPVAYDSYQNAI LDLKNGRIDGVFGDTAVVNEWLKNNPQLAAVGEYVTDPQYFGIGLGIAVRPDNQALLHQLNQALAAIKANGTYQKISDKW FPAS >Mature_244_residues MKKLLACAIVVACSFSAQAAENIRFASSATYPPFESLDASNNIVGFDIDLAKALCQEMKANCTFNNQAFDSLITALKFKR YDAVISGMDITPERQRQVAFTQPYYANSAIIIAQKGKYHSIADMKGLRVGMENGTTHQKYLQDKHPEIKPVAYDSYQNAI LDLKNGRIDGVFGDTAVVNEWLKNNPQLAAVGEYVTDPQYFGIGLGIAVRPDNQALLHQLNQALAAIKANGTYQKISDKW FPAS
Specific function: Part of the ABC transporter complex ArtPIQMJ involved in arginine transport. Binds L-arginine with high affinity [H]
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787085, Length=242, Percent_Identity=73.1404958677686, Blast_Score=389, Evalue=1e-109, Organism=Escherichia coli, GI1787088, Length=241, Percent_Identity=65.5601659751037, Blast_Score=347, Evalue=5e-97, Organism=Escherichia coli, GI1788648, Length=229, Percent_Identity=37.9912663755458, Blast_Score=160, Evalue=7e-41, Organism=Escherichia coli, GI1788649, Length=251, Percent_Identity=35.0597609561753, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1788228, Length=254, Percent_Identity=28.3464566929134, Blast_Score=117, Evalue=9e-28, Organism=Escherichia coli, GI1787031, Length=244, Percent_Identity=29.5081967213115, Blast_Score=106, Evalue=2e-24,
Paralogues:
None
Copy number: 1180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015683 - InterPro: IPR005768 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 26879; Mature: 26879
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS01039 SBP_BACTERIAL_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLLACAIVVACSFSAQAAENIRFASSATYPPFESLDASNNIVGFDIDLAKALCQEMKA CHHHHHHHHHHHHCCCHHHHHCEEECCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHHC NCTFNNQAFDSLITALKFKRYDAVISGMDITPERQRQVAFTQPYYANSAIIIAQKGKYHS CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEECCCEECCCEEEEEECCCCCC IADMKGLRVGMENGTTHQKYLQDKHPEIKPVAYDSYQNAILDLKNGRIDGVFGDTAVVNE HHCCCCEEEECCCCCCHHHHHHHCCCCCCCEEECCHHHHEEECCCCEECCEECCHHHHHH WLKNNPQLAAVGEYVTDPQYFGIGLGIAVRPDNQALLHQLNQALAAIKANGTYQKISDKW HHHCCCCEEECCCHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCCC FPAS CCCC >Mature Secondary Structure MKKLLACAIVVACSFSAQAAENIRFASSATYPPFESLDASNNIVGFDIDLAKALCQEMKA CHHHHHHHHHHHHCCCHHHHHCEEECCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHHHC NCTFNNQAFDSLITALKFKRYDAVISGMDITPERQRQVAFTQPYYANSAIIIAQKGKYHS CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEECCCEECCCEEEEEECCCCCC IADMKGLRVGMENGTTHQKYLQDKHPEIKPVAYDSYQNAILDLKNGRIDGVFGDTAVVNE HHCCCCEEEECCCCCCHHHHHHHCCCCCCCEEECCHHHHEEECCCCEECCEECCHHHHHH WLKNNPQLAAVGEYVTDPQYFGIGLGIAVRPDNQALLHQLNQALAAIKANGTYQKISDKW HHHCCCCEEECCCHHCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCCC FPAS CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8501075; 8905232; 9278503; 9298646; 9600841 [H]