| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920360
Identifier: 238920360
GI number: 238920360
Start: 2363326
End: 2363778
Strand: Direct
Name: 238920360
Synonym: NT01EI_2470
Alternate gene names: NA
Gene position: 2363326-2363778 (Clockwise)
Preceding gene: 238920359
Following gene: 238920369
Centisome position: 61.99
GC content: 55.85
Gene sequence:
>453_bases ATGTCTATTGATGCAACTCTCGACCAACGCTGGCAGTATTGCCATCAGCCGCTGAGCTGGCGCCATGCCATCCATCTTGC CTGTCAACCGCTGATCAGCGATAAGAAGATTAGCGCCCATTATCCGCTGCACATCATCGACTCACTGAAACGGGGCAAGC AGGATTTCATGGTACGCGAAGGTGTGATGCTGGTATTCGCCCAACCGCAGCATGGGGTACTCAGTGAGAAGGGGGAAGCA TCCGTACTCAAGTGTGATAAACCGGTCGTCATGCCAGATGGAGCTGAAGTGACCCTGATTATCACGCTCTCCGCCGGGAC GCAGCAGGCACTGTATGATTTGCACGGCCGGATCGAAAACTGGCTGGAGATCAACAACGGCTTCGAGCTGTTCACCCAGG CAACCAGCCAGAACATGCTGGGGGCCCGAATTCAGGCCACGCTGCTGCGCTGA
Upstream 100 bases:
>100_bases CCCACGCCTCATTGTCACTGCGACTGTAGACGGCTCAATGAAATTATCATTAGGGACAGCATAGATAATTATTTCAGGTA CAAGGTTACCGGAGGATTTT
Downstream 100 bases:
>100_bases CAGCAGAACCCTGTCCCACCACGCGGGTGGGTCTATGCCGCACCATAAAGACACCCTGAGCCCTGCGCAGGGTGTCTTGC TTTAGGCCGTCGGCAGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 150; Mature: 149
Protein sequence:
>150_residues MSIDATLDQRWQYCHQPLSWRHAIHLACQPLISDKKISAHYPLHIIDSLKRGKQDFMVREGVMLVFAQPQHGVLSEKGEA SVLKCDKPVVMPDGAEVTLIITLSAGTQQALYDLHGRIENWLEINNGFELFTQATSQNMLGARIQATLLR
Sequences:
>Translated_150_residues MSIDATLDQRWQYCHQPLSWRHAIHLACQPLISDKKISAHYPLHIIDSLKRGKQDFMVREGVMLVFAQPQHGVLSEKGEA SVLKCDKPVVMPDGAEVTLIITLSAGTQQALYDLHGRIENWLEINNGFELFTQATSQNMLGARIQATLLR >Mature_149_residues SIDATLDQRWQYCHQPLSWRHAIHLACQPLISDKKISAHYPLHIIDSLKRGKQDFMVREGVMLVFAQPQHGVLSEKGEAS VLKCDKPVVMPDGAEVTLIITLSAGTQQALYDLHGRIENWLEINNGFELFTQATSQNMLGARIQATLLR
Specific function: Unknown
COG id: COG1762
COG function: function code GT; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16905; Mature: 16774
Theoretical pI: Translated: 7.20; Mature: 7.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIDATLDQRWQYCHQPLSWRHAIHLACQPLISDKKISAHYPLHIIDSLKRGKQDFMVRE CCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCHHHHHEEC GVMLVFAQPQHGVLSEKGEASVLKCDKPVVMPDGAEVTLIITLSAGTQQALYDLHGRIEN CEEEEEECCCCCCCCCCCCCCEEECCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHH WLEINNGFELFTQATSQNMLGARIQATLLR HEEECCCCEEEEHHHCCCCCCHHHEEEECC >Mature Secondary Structure SIDATLDQRWQYCHQPLSWRHAIHLACQPLISDKKISAHYPLHIIDSLKRGKQDFMVRE CCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHCCHHHHHEEC GVMLVFAQPQHGVLSEKGEASVLKCDKPVVMPDGAEVTLIITLSAGTQQALYDLHGRIEN CEEEEEECCCCCCCCCCCCCCEEECCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHH WLEINNGFELFTQATSQNMLGARIQATLLR HEEECCCCEEEEHHHCCCCCCHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA