| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is tycC [H]
Identifier: 238920284
GI number: 238920284
Start: 2292332
End: 2294572
Strand: Reverse
Name: tycC [H]
Synonym: NT01EI_2394
Alternate gene names: 238920284
Gene position: 2294572-2292332 (Counterclockwise)
Preceding gene: 238920286
Following gene: 238920283
Centisome position: 60.19
GC content: 47.39
Gene sequence:
>2241_bases ATGACTATGTTAGATAGAACATTAATTTCAGCATTTACAATTCATGTTAAAAATACACCAGATAAAGTGGCGATAAAACA CAATGGAAAGCAAACAACCTATAGGCAGCTTGATGAATTATCAACAAATATTGCCAGTTATATCTGGCAAAGAAAACCTG GTCATGATAAGTCCACGTCAATATTAATTTGCCTCGAGCGCAGCGAACTTACTATTGGCGTGATTCTTGCTTGCGTGAAG CTTGGTTTTACATATGTTCCCTTTGATCCAAAAAATCCTGACGAACGCTTGCAATATATGCTTGATGACTGTCGGCCCGC ATTGGTTATCACCAGCAAGAAAGATGCAAAAAGGCAAGATGGTTACCTTGAAATATATGTTGAGGACATCCCGCTGCCCA CAGCGGAAGTATCTCCTGATTTTCCAGGAGTATCGAATCTGGAGGCGGTTTATATTATGTACACCTCCGGCTCGACCGGA AATCCCAAGGGTGTCGTCATTTCACAGAAAGGAATCCTTCGTCTGGTGCTTGATGCCAAACCATTCCAGTTTTCATCTGA TGCCATTATTGCGCAATCTGGGAATATCGCTTTTGATGCGTCAACGTTTGAAATCTGGGGGGCGCTGCTTAACGGTGCTA CGCTGGTTATTACGCCTTATGAGACCGTGATTGATAGTGATGCATTGGCGACGTTTCTGTGCGTCGAAACAATCACTGAT GCTTGGTTTACCGTGGCACTCTTTAACCTGCTGGTGATGGAAAACCCTGGTGTGTTTGGTTCGTTAAACAATGTCTTAAT CGGTGGGGATGCGCTAAACCCCAAATTGGTCCATGCCGTACTCTGTTCTGATACACCGCCTGGTGCACTGTGGAATGGCT ATGGTCCGACAGAAAATACGGTATTTACTACGTTGCACCGAATTACGCTGGAAGACTCAACGCGGAGTAGTATTCCAATT GGAATACCGATAGCGGGAACGCACTGCTATGTGCTCGATGCGGATCGTCAGCCTGTTATACCGGGAGAGGAGGGGGAGCT ATATACCAGTGGGGCCGGGTTGGCGACCGGATATCTGAACAAGCCGGAAAAAACCGCTGAGGCATTTTTCCCTAATCCTT ACTATAAGCTAGAGAAATGCCAGAACCTGCAATCCGCAAGCGCATGGATGTATAAAACCGGCGATCGCGTGAAGATGCTT GCAGATGGCACTTTGGATTTTCTGGGGCGGGTGGATAACCAGGTAAAAATTCGCGGATTCCGTCTGGAACCTGGAGAGGT GGAGTTTCAGCTGTGCCAACTCGCTGATGTGGATCTGGCTGTTGTGACGGTTGTGGAACATCAGGGGCAGAAAAAACTGG CTGCATGGTGTAAAAGCTCCCGGAATGCTAACGAGATTCTGCAACTATTCCGCCAGCAGGTTCCGGCATATATGGTGCCT TCTTATCTTCAGGTGGTAGAAAGCTTCCCCGTAACGGCAAACGGTAAAATTGACAAACGTAGTCTTCCTGCGCCTCAGTT CAACAATCATCAGGCCACACCGCCGCAGACGGCCACAGAAATTTGGCTAAGTAAGACCTGGCAGCAGTTGCTCTCTTTAC CACATCCCGTTGGCCGTGAGGATAACTTCTCTTCTCTTGGTGGGCATTCACTGCTGATTGTTAAACTCAAGCAAAAAATT CAAACAGGCCTGAATAAACGTGTTTCATTAACTGAACTATTCAATCTTTCTTCGTTGAGCGACATGGCTGAGTATATCGA TACGCTGCCAGAAAGCTGCGGCGTTATCACACTCAACCGGGTTGGTTACGGGGAAAAAATCGCGCTCACAAACGAACAGC TTCGTTTGTGGTTGATTTGCAATCGTGAGCCACAATTACCCCACTACTCTATTCCCCTGGTGTTTCAACTTTCAGGTGAA CTTCATCCCGAGCGGCTGGCGCAAGCGCTGGATTCGCTCTGCCAGCGCCATCAAAGCCTGCGCTCGCGTATTTTCAACAC GGAAGGGACGCCTTGGCAGCAAGTGGCAGAAATGTCCCCCCAGCTGATTATGGATGAAGTAAAGGATGAAGATACGCTGC AGGAGATACTGCGTCAGGAGGTTCAACGGCCGTTCACCTTTGGGAATGATCCATTACTGCGTATGGTGCTCTATCGCGTA GCTCATAGCCGCTGGGTACTGTTTATTAATATTCACCATATTATTACAGATGGCTGGTCAATGGGCGTTTTTTTTCCGTG A
Upstream 100 bases:
>100_bases TTTATGCGGTGCGTCTGTTGAGCTCACCTGCAAGGCACTTGGCATTAAGTAAAATCAATGTCTTCATTGCTGTTGCATAC CATAAGTGGATATTTTACAT
Downstream 100 bases:
>100_bases GCTTTCATCCCTCTACGCTCAGGATGACGAACTTCCTGCACTGGATTACCAATTTATCGATTATTGTGCCTGGCAGCAGA GGTTGGATCACTCGGCTGAT
Product: hypothetical protein
Products: pyrophosphate; AMP; enterobactin; pyrophosphate; L-Seryl-AMP [C]
Alternate protein names: Tyrocidine synthase III; ATP-dependent asparagine adenylase; AsnA; Asparagine activase; ATP-dependent glutamine adenylase; GlnA; Glutamine activase; ATP-dependent tyrosine adenylase; TyrA; Tyrosine activase; ATP-dependent valine adenylase; ValA; Valine activase; ATP-dependent ornithine adenylase; OrnA; Ornithine activase; ATP-dependent leucine adenylase; LeuA; Leucine activase [H]
Number of amino acids: Translated: 746; Mature: 745
Protein sequence:
>746_residues MTMLDRTLISAFTIHVKNTPDKVAIKHNGKQTTYRQLDELSTNIASYIWQRKPGHDKSTSILICLERSELTIGVILACVK LGFTYVPFDPKNPDERLQYMLDDCRPALVITSKKDAKRQDGYLEIYVEDIPLPTAEVSPDFPGVSNLEAVYIMYTSGSTG NPKGVVISQKGILRLVLDAKPFQFSSDAIIAQSGNIAFDASTFEIWGALLNGATLVITPYETVIDSDALATFLCVETITD AWFTVALFNLLVMENPGVFGSLNNVLIGGDALNPKLVHAVLCSDTPPGALWNGYGPTENTVFTTLHRITLEDSTRSSIPI GIPIAGTHCYVLDADRQPVIPGEEGELYTSGAGLATGYLNKPEKTAEAFFPNPYYKLEKCQNLQSASAWMYKTGDRVKML ADGTLDFLGRVDNQVKIRGFRLEPGEVEFQLCQLADVDLAVVTVVEHQGQKKLAAWCKSSRNANEILQLFRQQVPAYMVP SYLQVVESFPVTANGKIDKRSLPAPQFNNHQATPPQTATEIWLSKTWQQLLSLPHPVGREDNFSSLGGHSLLIVKLKQKI QTGLNKRVSLTELFNLSSLSDMAEYIDTLPESCGVITLNRVGYGEKIALTNEQLRLWLICNREPQLPHYSIPLVFQLSGE LHPERLAQALDSLCQRHQSLRSRIFNTEGTPWQQVAEMSPQLIMDEVKDEDTLQEILRQEVQRPFTFGNDPLLRMVLYRV AHSRWVLFINIHHIITDGWSMGVFFP
Sequences:
>Translated_746_residues MTMLDRTLISAFTIHVKNTPDKVAIKHNGKQTTYRQLDELSTNIASYIWQRKPGHDKSTSILICLERSELTIGVILACVK LGFTYVPFDPKNPDERLQYMLDDCRPALVITSKKDAKRQDGYLEIYVEDIPLPTAEVSPDFPGVSNLEAVYIMYTSGSTG NPKGVVISQKGILRLVLDAKPFQFSSDAIIAQSGNIAFDASTFEIWGALLNGATLVITPYETVIDSDALATFLCVETITD AWFTVALFNLLVMENPGVFGSLNNVLIGGDALNPKLVHAVLCSDTPPGALWNGYGPTENTVFTTLHRITLEDSTRSSIPI GIPIAGTHCYVLDADRQPVIPGEEGELYTSGAGLATGYLNKPEKTAEAFFPNPYYKLEKCQNLQSASAWMYKTGDRVKML ADGTLDFLGRVDNQVKIRGFRLEPGEVEFQLCQLADVDLAVVTVVEHQGQKKLAAWCKSSRNANEILQLFRQQVPAYMVP SYLQVVESFPVTANGKIDKRSLPAPQFNNHQATPPQTATEIWLSKTWQQLLSLPHPVGREDNFSSLGGHSLLIVKLKQKI QTGLNKRVSLTELFNLSSLSDMAEYIDTLPESCGVITLNRVGYGEKIALTNEQLRLWLICNREPQLPHYSIPLVFQLSGE LHPERLAQALDSLCQRHQSLRSRIFNTEGTPWQQVAEMSPQLIMDEVKDEDTLQEILRQEVQRPFTFGNDPLLRMVLYRV AHSRWVLFINIHHIITDGWSMGVFFP >Mature_745_residues TMLDRTLISAFTIHVKNTPDKVAIKHNGKQTTYRQLDELSTNIASYIWQRKPGHDKSTSILICLERSELTIGVILACVKL GFTYVPFDPKNPDERLQYMLDDCRPALVITSKKDAKRQDGYLEIYVEDIPLPTAEVSPDFPGVSNLEAVYIMYTSGSTGN PKGVVISQKGILRLVLDAKPFQFSSDAIIAQSGNIAFDASTFEIWGALLNGATLVITPYETVIDSDALATFLCVETITDA WFTVALFNLLVMENPGVFGSLNNVLIGGDALNPKLVHAVLCSDTPPGALWNGYGPTENTVFTTLHRITLEDSTRSSIPIG IPIAGTHCYVLDADRQPVIPGEEGELYTSGAGLATGYLNKPEKTAEAFFPNPYYKLEKCQNLQSASAWMYKTGDRVKMLA DGTLDFLGRVDNQVKIRGFRLEPGEVEFQLCQLADVDLAVVTVVEHQGQKKLAAWCKSSRNANEILQLFRQQVPAYMVPS YLQVVESFPVTANGKIDKRSLPAPQFNNHQATPPQTATEIWLSKTWQQLLSLPHPVGREDNFSSLGGHSLLIVKLKQKIQ TGLNKRVSLTELFNLSSLSDMAEYIDTLPESCGVITLNRVGYGEKIALTNEQLRLWLICNREPQLPHYSIPLVFQLSGEL HPERLAQALDSLCQRHQSLRSRIFNTEGTPWQQVAEMSPQLIMDEVKDEDTLQEILRQEVQRPFTFGNDPLLRMVLYRVA HSRWVLFINIHHIITDGWSMGVFFP
Specific function: Incorporates six amino acids (for tyrocidine A, Asn, Gln, Tyr, Val, Orn, and Leu) in their L-configuration into the peptide product [H]
COG id: COG1020
COG function: function code Q; Non-ribosomal peptide synthetase modules and related proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 6 acyl carrier domains [H]
Homologues:
Organism=Homo sapiens, GI38505220, Length=480, Percent_Identity=24.375, Blast_Score=87, Evalue=6e-17, Organism=Homo sapiens, GI122937307, Length=528, Percent_Identity=24.2424242424242, Blast_Score=73, Evalue=1e-12, Organism=Escherichia coli, GI1786801, Length=631, Percent_Identity=29.7939778129952, Blast_Score=233, Evalue=3e-62, Organism=Escherichia coli, GI145693145, Length=538, Percent_Identity=24.1635687732342, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1786810, Length=540, Percent_Identity=24.0740740740741, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1788107, Length=230, Percent_Identity=25.6521739130435, Blast_Score=71, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17556356, Length=578, Percent_Identity=26.643598615917, Blast_Score=140, Evalue=3e-33, Organism=Caenorhabditis elegans, GI17550940, Length=590, Percent_Identity=22.8813559322034, Blast_Score=115, Evalue=1e-25, Organism=Saccharomyces cerevisiae, GI6319591, Length=671, Percent_Identity=23.0998509687034, Blast_Score=120, Evalue=9e-28, Organism=Saccharomyces cerevisiae, GI6319699, Length=381, Percent_Identity=23.0971128608924, Blast_Score=68, Evalue=4e-12, Organism=Drosophila melanogaster, GI24648676, Length=507, Percent_Identity=30.1775147928994, Blast_Score=184, Evalue=1e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010071 - InterPro: IPR009081 - InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR001242 - InterPro: IPR006163 - InterPro: IPR020806 - InterPro: IPR006162 - InterPro: IPR001031 [H]
Pfam domain/function: PF00501 AMP-binding; PF00668 Condensation; PF00550 PP-binding; PF00975 Thioesterase [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 83302; Mature: 83171
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS50075 ACP_DOMAIN ; PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMLDRTLISAFTIHVKNTPDKVAIKHNGKQTTYRQLDELSTNIASYIWQRKPGHDKSTS CCCHHHHHEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE ILICLERSELTIGVILACVKLGFTYVPFDPKNPDERLQYMLDDCRPALVITSKKDAKRQD EEEEEECCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC GYLEIYVEDIPLPTAEVSPDFPGVSNLEAVYIMYTSGSTGNPKGVVISQKGILRLVLDAK CEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCEEEEEEECC PFQFSSDAIIAQSGNIAFDASTFEIWGALLNGATLVITPYETVIDSDALATFLCVETITD CCCCCCCEEEEECCCEEEECHHHHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHHHHH AWFTVALFNLLVMENPGVFGSLNNVLIGGDALNPKLVHAVLCSDTPPGALWNGYGPTENT HHHHHHHHHHHHCCCCCCEECCCCEEEECCCCCHHHEEEEEECCCCCCCCCCCCCCCCCC VFTTLHRITLEDSTRSSIPIGIPIAGTHCYVLDADRQPVIPGEEGELYTSGAGLATGYLN EEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCEEECCCC KPEKTAEAFFPNPYYKLEKCQNLQSASAWMYKTGDRVKMLADGTLDFLGRVDNQVKIRGF CCCHHHHHCCCCCCHHHHHHCCHHHCCCEEEECCCEEEEEECCCHHHHHCCCCEEEEEEE RLEPGEVEFQLCQLADVDLAVVTVVEHQGQKKLAAWCKSSRNANEILQLFRQQVPAYMVP EECCCCCEEEEEEECCCCEEEEEEEHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH SYLQVVESFPVTANGKIDKRSLPAPQFNNHQATPPQTATEIWLSKTWQQLLSLPHPVGRE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC DNFSSLGGHSLLIVKLKQKIQTGLNKRVSLTELFNLSSLSDMAEYIDTLPESCGVITLNR CCCCCCCCCEEEEEEEHHHHHHCCCCCEEHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEC VGYGEKIALTNEQLRLWLICNREPQLPHYSIPLVFQLSGELHPERLAQALDSLCQRHQSL CCCCCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH RSRIFNTEGTPWQQVAEMSPQLIMDEVKDEDTLQEILRQEVQRPFTFGNDPLLRMVLYRV HHHHCCCCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH AHSRWVLFINIHHIITDGWSMGVFFP HCCCEEEEEEEEEEEECCCCCCCCCC >Mature Secondary Structure TMLDRTLISAFTIHVKNTPDKVAIKHNGKQTTYRQLDELSTNIASYIWQRKPGHDKSTS CCHHHHHEEEEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE ILICLERSELTIGVILACVKLGFTYVPFDPKNPDERLQYMLDDCRPALVITSKKDAKRQD EEEEEECCCCHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCC GYLEIYVEDIPLPTAEVSPDFPGVSNLEAVYIMYTSGSTGNPKGVVISQKGILRLVLDAK CEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCEEEEEEECC PFQFSSDAIIAQSGNIAFDASTFEIWGALLNGATLVITPYETVIDSDALATFLCVETITD CCCCCCCEEEEECCCEEEECHHHHHHHHHHCCCEEEEECHHHHHCCHHHHHHHHHHHHHH AWFTVALFNLLVMENPGVFGSLNNVLIGGDALNPKLVHAVLCSDTPPGALWNGYGPTENT HHHHHHHHHHHHCCCCCCEECCCCEEEECCCCCHHHEEEEEECCCCCCCCCCCCCCCCCC VFTTLHRITLEDSTRSSIPIGIPIAGTHCYVLDADRQPVIPGEEGELYTSGAGLATGYLN EEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCEEECCCCEEECCCC KPEKTAEAFFPNPYYKLEKCQNLQSASAWMYKTGDRVKMLADGTLDFLGRVDNQVKIRGF CCCHHHHHCCCCCCHHHHHHCCHHHCCCEEEECCCEEEEEECCCHHHHHCCCCEEEEEEE RLEPGEVEFQLCQLADVDLAVVTVVEHQGQKKLAAWCKSSRNANEILQLFRQQVPAYMVP EECCCCCEEEEEEECCCCEEEEEEEHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHH SYLQVVESFPVTANGKIDKRSLPAPQFNNHQATPPQTATEIWLSKTWQQLLSLPHPVGRE HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC DNFSSLGGHSLLIVKLKQKIQTGLNKRVSLTELFNLSSLSDMAEYIDTLPESCGVITLNR CCCCCCCCCEEEEEEEHHHHHHCCCCCEEHHHHHCHHHHHHHHHHHHHCCCCCCEEEEEC VGYGEKIALTNEQLRLWLICNREPQLPHYSIPLVFQLSGELHPERLAQALDSLCQRHQSL CCCCCEEEEECCCEEEEEEECCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHH RSRIFNTEGTPWQQVAEMSPQLIMDEVKDEDTLQEILRQEVQRPFTFGNDPLLRMVLYRV HHHHCCCCCCCHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH AHSRWVLFINIHHIITDGWSMGVFFP HCCCEEEEEEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: Phosphopantetheine. [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 6 ATP; L-serine; 2,3-dihydroxybenzoate [C]
Specific reaction: 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Seryl-AMP 6 ATP + 3 L-serine + 3 2,3-dihydroxybenzoate = 6 pyrophosphate + 6 AMP + enterobactin ATP + L-serine = pyrophosphate + L-Ser
General reaction: Transferases; Acyltransferases; Transferring groups other than amino-acyl groups [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9352938; 10801488 [H]