Click here to switch to the map view.

The map label for this gene is yceD [H]

Identifier: 238920265

GI number: 238920265

Start: 2274598

End: 2275098

Strand: Reverse

Name: yceD [H]

Synonym: NT01EI_2374

Alternate gene names: 238920265

Gene position: 2275098-2274598 (Counterclockwise)

Preceding gene: 238920268

Following gene: 238920264

Centisome position: 59.68

GC content: 53.29

Gene sequence:

>501_bases
TTGACCCTTGATCCGGTACGCGCTGCGCAGAAGCGTTTAGACTATGTTGGTGTCTATGCTTCCGGGCAGTTAACGCGCTT
AGCTGAATCTGTGGTCAGCGTGGACAGCGATGTCTCCGCTGAAATGTCCTTTTCAATCGACAATCAGCGGTTGGCTGTGA
TCCGTGGGCATGCCGACGTTAGCGTAACGTTGCAGTGCCAGCGCTGTAATCAGCCATTCCAGCATCACCTCCACGTAACG
TATTGTTTCAGTCCGGTCGCCAATGACGAGCAGGCTGAAGCATTGCCGGAAATTTACGAGCCGATCGACGTCAATGAATA
CGGCGAAGTCGATCTGCTGGCGATGGTCGAAGATGAAATCATCCTCGCCTTGCCGGTGGTTCCGGTGCATGAATCTGAAC
ACTGTGAAGTGTCCGACGCGGACATGGTGTTCGGTAAGCTGCCTCCCGAGGCGGAAAAACCGAATCCATTTGCCGCACTA
GCCAGTTTAAAGCGAAAGTAA

Upstream 100 bases:

>100_bases
GCGAATATTGGGGGAAAGGGGCGCGAGAGTGGCCTTTTCCTTTGACTCTATGGCTTTACAAAGTTAATATGCGCGCCCTA
TGCAAAAGGTAAAATTACCC

Downstream 100 bases:

>100_bases
TCAAGGAGTAAGGTCCATGGCCGTACAGCAGAACAAAAAAACCCGCTCTTGCCGTGGTATGCGTCGTTCCCACGATGCGC
TGACCACTGCAACCGTCTCT

Product: hypothetical protein

Products: NA

Alternate protein names: G30K [H]

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MTLDPVRAAQKRLDYVGVYASGQLTRLAESVVSVDSDVSAEMSFSIDNQRLAVIRGHADVSVTLQCQRCNQPFQHHLHVT
YCFSPVANDEQAEALPEIYEPIDVNEYGEVDLLAMVEDEIILALPVVPVHESEHCEVSDADMVFGKLPPEAEKPNPFAAL
ASLKRK

Sequences:

>Translated_166_residues
MTLDPVRAAQKRLDYVGVYASGQLTRLAESVVSVDSDVSAEMSFSIDNQRLAVIRGHADVSVTLQCQRCNQPFQHHLHVT
YCFSPVANDEQAEALPEIYEPIDVNEYGEVDLLAMVEDEIILALPVVPVHESEHCEVSDADMVFGKLPPEAEKPNPFAAL
ASLKRK
>Mature_165_residues
TLDPVRAAQKRLDYVGVYASGQLTRLAESVVSVDSDVSAEMSFSIDNQRLAVIRGHADVSVTLQCQRCNQPFQHHLHVTY
CFSPVANDEQAEALPEIYEPIDVNEYGEVDLLAMVEDEIILALPVVPVHESEHCEVSDADMVFGKLPPEAEKPNPFAALA
SLKRK

Specific function: Unknown

COG id: COG1399

COG function: function code R; Predicted metal-binding, possibly nucleic acid-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0159 [H]

Homologues:

Organism=Escherichia coli, GI1787329, Length=166, Percent_Identity=76.5060240963855, Blast_Score=270, Evalue=3e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003772 [H]

Pfam domain/function: PF02620 DUF177 [H]

EC number: NA

Molecular weight: Translated: 18348; Mature: 18217

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLDPVRAAQKRLDYVGVYASGQLTRLAESVVSVDSDVSAEMSFSIDNQRLAVIRGHADV
CCCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCE
SVTLQCQRCNQPFQHHLHVTYCFSPVANDEQAEALPEIYEPIDVNEYGEVDLLAMVEDEI
EEEEEEHHCCCCHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCE
ILALPVVPVHESEHCEVSDADMVFGKLPPEAEKPNPFAALASLKRK
EEEECCEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TLDPVRAAQKRLDYVGVYASGQLTRLAESVVSVDSDVSAEMSFSIDNQRLAVIRGHADV
CCCHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCE
SVTLQCQRCNQPFQHHLHVTYCFSPVANDEQAEALPEIYEPIDVNEYGEVDLLAMVEDEI
EEEEEEHHCCCCHHHCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCE
ILALPVVPVHESEHCEVSDADMVFGKLPPEAEKPNPFAALASLKRK
EEEECCEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]