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The map label for this gene is yghB [H]

Identifier: 238920237

GI number: 238920237

Start: 2242564

End: 2243226

Strand: Direct

Name: yghB [H]

Synonym: NT01EI_2346

Alternate gene names: 238920237

Gene position: 2242564-2243226 (Clockwise)

Preceding gene: 238920236

Following gene: 238920238

Centisome position: 58.82

GC content: 61.84

Gene sequence:

>663_bases
ATGGAAGTTATTAAAGAGATCCTGCATGCACTGTGGGTACAAGATTTCGCCGTGCTGAGCGATCCGCATATCGTCTGGGT
TATTTACGCCATTCTTTTCACTACGCTGGTGCTGGAGAATGGCCTGCTGCCCGCTGCCTTTCTGCCCGGCGACAGCCTGC
TGTTGCTCTCCGGGGCCCTGATCGCCCGCTCCGTACTGCCCTTTTTCCCCACCCTGTGCCTGCTGGTTGTGGCCTCCAGC
CTGGGCTGCTGGATCAGCTATCTGCAGGGGCGCTGGCTGGGCGATGCCCGCCTGGTGCAGGGCTGGCTGCTGCGATTACC
GCCCCAGTACCACCAGCGCGCCTATAATCTGTTTCACCGCCACGGTCTGATGGCGCTGCTGATCGGCCGCTTTTTGGCCT
TTGTCCGCACCATTCTGCCGGTGCTGGCCGGTCTGTCCGGGCTACATAACGCCCGCTTTCAGCTCTTCAACTGGATCAGC
GCCCTGCTGTGGGTCGGCGTAGTCATGGGGCTGGGGCTGGCCATCAGCAACATCCCCTTCGTTAAGCAGCATCAGGATCA
GGTAATGTCCATCCTGCTCATCCTGCCGGTGGTTCTGCTGGTCAGTGGGCTGCTGGGCACCCTGCTGCTGCTGCTGCGTC
GGCGCCGCCAGCCGCACGGCTGA

Upstream 100 bases:

>100_bases
GGGTTATCAGGCTGGCGTAGCGTCTGTTGCGCTCACTGGGGTAGAGGCATCCTCTCCACTTTTTCCCAAGAGCCTGTCCG
CAGTCAATTAAGGTAAGGTA

Downstream 100 bases:

>100_bases
TCTCCTGCGGACGGCGGGCGCCCTGTCGCAGCGCCGTCCAGCGCAGGGCGGCGCTGCAAATCAGACTATTTACCTGTTCG
CCCTTTTTCCCACGCCTATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MEVIKEILHALWVQDFAVLSDPHIVWVIYAILFTTLVLENGLLPAAFLPGDSLLLLSGALIARSVLPFFPTLCLLVVASS
LGCWISYLQGRWLGDARLVQGWLLRLPPQYHQRAYNLFHRHGLMALLIGRFLAFVRTILPVLAGLSGLHNARFQLFNWIS
ALLWVGVVMGLGLAISNIPFVKQHQDQVMSILLILPVVLLVSGLLGTLLLLLRRRRQPHG

Sequences:

>Translated_220_residues
MEVIKEILHALWVQDFAVLSDPHIVWVIYAILFTTLVLENGLLPAAFLPGDSLLLLSGALIARSVLPFFPTLCLLVVASS
LGCWISYLQGRWLGDARLVQGWLLRLPPQYHQRAYNLFHRHGLMALLIGRFLAFVRTILPVLAGLSGLHNARFQLFNWIS
ALLWVGVVMGLGLAISNIPFVKQHQDQVMSILLILPVVLLVSGLLGTLLLLLRRRRQPHG
>Mature_220_residues
MEVIKEILHALWVQDFAVLSDPHIVWVIYAILFTTLVLENGLLPAAFLPGDSLLLLSGALIARSVLPFFPTLCLLVVASS
LGCWISYLQGRWLGDARLVQGWLLRLPPQYHQRAYNLFHRHGLMALLIGRFLAFVRTILPVLAGLSGLHNARFQLFNWIS
ALLWVGVVMGLGLAISNIPFVKQHQDQVMSILLILPVVLLVSGLLGTLLLLLRRRRQPHG

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1789384, Length=215, Percent_Identity=63.2558139534884, Blast_Score=276, Evalue=6e-76,
Organism=Escherichia coli, GI1789481, Length=220, Percent_Identity=57.7272727272727, Blast_Score=243, Evalue=7e-66,
Organism=Escherichia coli, GI1788656, Length=162, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24587; Mature: 24587

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVIKEILHALWVQDFAVLSDPHIVWVIYAILFTTLVLENGLLPAAFLPGDSLLLLSGAL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IARSVLPFFPTLCLLVVASSLGCWISYLQGRWLGDARLVQGWLLRLPPQYHQRAYNLFHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
HGLMALLIGRFLAFVRTILPVLAGLSGLHNARFQLFNWISALLWVGVVMGLGLAISNIPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VKQHQDQVMSILLILPVVLLVSGLLGTLLLLLRRRRQPHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MEVIKEILHALWVQDFAVLSDPHIVWVIYAILFTTLVLENGLLPAAFLPGDSLLLLSGAL
CHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
IARSVLPFFPTLCLLVVASSLGCWISYLQGRWLGDARLVQGWLLRLPPQYHQRAYNLFHR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
HGLMALLIGRFLAFVRTILPVLAGLSGLHNARFQLFNWISALLWVGVVMGLGLAISNIPF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
VKQHQDQVMSILLILPVVLLVSGLLGTLLLLLRRRRQPHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]