| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920185
Identifier: 238920185
GI number: 238920185
Start: 2194292
End: 2194843
Strand: Reverse
Name: 238920185
Synonym: NT01EI_2294
Alternate gene names: NA
Gene position: 2194843-2194292 (Counterclockwise)
Preceding gene: 238920186
Following gene: 238920184
Centisome position: 57.57
GC content: 63.22
Gene sequence:
>552_bases ATGGCACTCACCAAGGATCAAATCTTCGATGCCCTGCTGGGGCGTGAAGGAGGATACGTCGATCACCCCAACGACAAGGG CGGGCCAACCAACTGGGGGATCACCGAGAAGGTGGCCCGTGCTCACGGCTACACCGGCGATATGCGCAACCTGACGCGGG CGCAGGCGCTGGAAATCTATGAGAGCGACTATTGGTCAGGGCCCCGCTTTGACCTGGTGGCAGACTATTCCGAGCTGGTG GCCGCCGAGCTGCTGGATACCGGGGTGAATATGGGGCCATCGGTTCCCGGCAAGTGGCTGCAGCGCTGGCTGACTGCCTT TAACGATGGCGGACGTCTGTACCCGGATATCAGCGCCGACGGGGTGATTGGGCCACGTACGCTCTCTGCGCTGCGTGCCT ATCTGGATGCCCGGGGTGCAGAGGGGGAGCAGGTGCTGCTGCGGGCGCTGAACTGCAGTCAGGGCGATCGTTATCTGGCG CTGGCCGAGCAGCGGGTGCAGAACGAGTCATTTCTGTATGGCTGGGTACGGGAGCGGGTGGCGCTGTCCTGA
Upstream 100 bases:
>100_bases GCGGTGCGATAGGTTTTATCGGCGTGCAGCAGATCCAGCGTTTTGCGATGTATATCCTGCAGCGCAAGCTGGGGATGCCG ACAGACAAGGAGCGGTAATT
Downstream 100 bases:
>100_bases TCGTCTTTGATGTGAAGCCAGAATTAACAGGTCGCTTAGGCGACTTTTTTATTACTGACGAAAGGAGATCTATATGTACG CACTAAAGAAAATCACGGTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MALTKDQIFDALLGREGGYVDHPNDKGGPTNWGITEKVARAHGYTGDMRNLTRAQALEIYESDYWSGPRFDLVADYSELV AAELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISADGVIGPRTLSALRAYLDARGAEGEQVLLRALNCSQGDRYLA LAEQRVQNESFLYGWVRERVALS
Sequences:
>Translated_183_residues MALTKDQIFDALLGREGGYVDHPNDKGGPTNWGITEKVARAHGYTGDMRNLTRAQALEIYESDYWSGPRFDLVADYSELV AAELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISADGVIGPRTLSALRAYLDARGAEGEQVLLRALNCSQGDRYLA LAEQRVQNESFLYGWVRERVALS >Mature_182_residues ALTKDQIFDALLGREGGYVDHPNDKGGPTNWGITEKVARAHGYTGDMRNLTRAQALEIYESDYWSGPRFDLVADYSELVA AELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISADGVIGPRTLSALRAYLDARGAEGEQVLLRALNCSQGDRYLAL AEQRVQNESFLYGWVRERVALS
Specific function: Unknown
COG id: COG3926
COG function: function code R; Putative secretion activating protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20270; Mature: 20139
Theoretical pI: Translated: 4.72; Mature: 4.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTKDQIFDALLGREGGYVDHPNDKGGPTNWGITEKVARAHGYTGDMRNLTRAQALEIY CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH ESDYWSGPRFDLVADYSELVAAELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISAD HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC GVIGPRTLSALRAYLDARGAEGEQVLLRALNCSQGDRYLALAEQRVQNESFLYGWVRERV CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH ALS HCC >Mature Secondary Structure ALTKDQIFDALLGREGGYVDHPNDKGGPTNWGITEKVARAHGYTGDMRNLTRAQALEIY CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHH ESDYWSGPRFDLVADYSELVAAELLDTGVNMGPSVPGKWLQRWLTAFNDGGRLYPDISAD HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC GVIGPRTLSALRAYLDARGAEGEQVLLRALNCSQGDRYLALAEQRVQNESFLYGWVRERV CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH ALS HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA