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The map label for this gene is cobD [H]

Identifier: 238920087

GI number: 238920087

Start: 2116142

End: 2117101

Strand: Reverse

Name: cobD [H]

Synonym: NT01EI_2192

Alternate gene names: 238920087

Gene position: 2117101-2116142 (Counterclockwise)

Preceding gene: 238920088

Following gene: 238920086

Centisome position: 55.53

GC content: 69.9

Gene sequence:

>960_bases
ATGACGCTCCTGGCCTGGTGTCTCGCCTGGATCCTCGACGCCGCGATCGGCGATCCGCCGCGCTGGCCGCACCCGGTACG
CTGGATGGGGCAGCTGATCACCGCCCTACAGCGTTGTGTACGCCGTCGCTGCCGCAGCGAGGGCGCGCTGCGCATCGGCG
GCGGCCTGATGTGGCTGACGGTGGTGGGGGGGACGTGGAGCGTGGCCTGGGGGGGCGTGACGCTGGCGCGGGCGATCCAC
CCGTGGCTGGGGTGGGCGGTGGAGGTCTGGATGATCTTTACCGCGCTGGCCGGCCGCTGTCTGGCGGACGCCGCCCGGGA
GGTCGAACGGCCGCTGCGTGCCGGTGCGCTCGCCGAGAGCCGCGAAAAGCTCTCCTGGATCGTAGGGCGCGATACCTCGT
CGCTGCAGCCGCCGCAGATCAACCGGGCGGTGGTGGAGACCGTCGCCGAGAATACGGTGGATGGCATCATCGCGCCGCTG
TTCTTCCTGCTGCTGGGCGGCGCGCCGCTGGCGATGGCCTACAAGGCGGTCAATACCCTCGACTCAATGGTGGGCTACAA
GCATGAAAAGTACCGGGCGATCGGCATGGTGAGCGCCCGGATGGATGATGCGGCGAACTACCTTCCCGCGCGGCTGAGCT
GGCTGCTGCTGAGCGCGGCGGCGTGGCTGTGCCGCGACGATTTTTCCCGTGCACTGCGCATCGGCTGGCGCGATCGCCGC
TGCCACAGCAGCCCCAACTGCGCGTGGTCAGAGGCGACCGTGGCCGGTGCGCTGGGGATCCGGCTGGGGGGGCCGAATGA
CTACTTCGGCCAGCGGGTGGATAAACCCTGGATCGGCGATGCGCGCCGCGCGGTGACCCCGGACGATATTTCCCGAACGG
TTCGACTGATGTGGGTCGCGTCAGCCCTGGCGCTGGCGCTGTTGATGGCGGTGCGCTGGCTGGTGGCCGGTGCGGCCTGA

Upstream 100 bases:

>100_bases
GATGGCAGGTCGGCAGCGCCTTTGCCAGCTATCTGCACCTGCATTTTGCCCAGCGCCCACAGATGCTGAACCGCTGGCTG
GCGGCCGCCAGGGCGGCCCT

Downstream 100 bases:

>100_bases
GGAGACGAGAACATGCAATATATCCAGCAACCCCGGGCGATTGAGGCCAAAAGCTTCGACATCATTGACGGGATCATCCG
TGAGACGCGCCCGGCGTATC

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTLLAWCLAWILDAAIGDPPRWPHPVRWMGQLITALQRCVRRRCRSEGALRIGGGLMWLTVVGGTWSVAWGGVTLARAIH
PWLGWAVEVWMIFTALAGRCLADAAREVERPLRAGALAESREKLSWIVGRDTSSLQPPQINRAVVETVAENTVDGIIAPL
FFLLLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDAANYLPARLSWLLLSAAAWLCRDDFSRALRIGWRDRR
CHSSPNCAWSEATVAGALGIRLGGPNDYFGQRVDKPWIGDARRAVTPDDISRTVRLMWVASALALALLMAVRWLVAGAA

Sequences:

>Translated_319_residues
MTLLAWCLAWILDAAIGDPPRWPHPVRWMGQLITALQRCVRRRCRSEGALRIGGGLMWLTVVGGTWSVAWGGVTLARAIH
PWLGWAVEVWMIFTALAGRCLADAAREVERPLRAGALAESREKLSWIVGRDTSSLQPPQINRAVVETVAENTVDGIIAPL
FFLLLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDAANYLPARLSWLLLSAAAWLCRDDFSRALRIGWRDRR
CHSSPNCAWSEATVAGALGIRLGGPNDYFGQRVDKPWIGDARRAVTPDDISRTVRLMWVASALALALLMAVRWLVAGAA
>Mature_318_residues
TLLAWCLAWILDAAIGDPPRWPHPVRWMGQLITALQRCVRRRCRSEGALRIGGGLMWLTVVGGTWSVAWGGVTLARAIHP
WLGWAVEVWMIFTALAGRCLADAAREVERPLRAGALAESREKLSWIVGRDTSSLQPPQINRAVVETVAENTVDGIIAPLF
FLLLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDAANYLPARLSWLLLSAAAWLCRDDFSRALRIGWRDRRC
HSSPNCAWSEATVAGALGIRLGGPNDYFGQRVDKPWIGDARRAVTPDDISRTVRLMWVASALALALLMAVRWLVAGAA

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 35094; Mature: 34963

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLAWCLAWILDAAIGDPPRWPHPVRWMGQLITALQRCVRRRCRSEGALRIGGGLMWLT
CHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEE
VVGGTWSVAWGGVTLARAIHPWLGWAVEVWMIFTALAGRCLADAAREVERPLRAGALAES
EECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REKLSWIVGRDTSSLQPPQINRAVVETVAENTVDGIIAPLFFLLLGGAPLAMAYKAVNTL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
DSMVGYKHEKYRAIGMVSARMDDAANYLPARLSWLLLSAAAWLCRDDFSRALRIGWRDRR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
CHSSPNCAWSEATVAGALGIRLGGPNDYFGQRVDKPWIGDARRAVTPDDISRTVRLMWVA
CCCCCCCCCCHHHHHHHHEEEECCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SALALALLMAVRWLVAGAA
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLLAWCLAWILDAAIGDPPRWPHPVRWMGQLITALQRCVRRRCRSEGALRIGGGLMWLT
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEE
VVGGTWSVAWGGVTLARAIHPWLGWAVEVWMIFTALAGRCLADAAREVERPLRAGALAES
EECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REKLSWIVGRDTSSLQPPQINRAVVETVAENTVDGIIAPLFFLLLGGAPLAMAYKAVNTL
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
DSMVGYKHEKYRAIGMVSARMDDAANYLPARLSWLLLSAAAWLCRDDFSRALRIGWRDRR
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
CHSSPNCAWSEATVAGALGIRLGGPNDYFGQRVDKPWIGDARRAVTPDDISRTVRLMWVA
CCCCCCCCCCHHHHHHHHEEEECCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SALALALLMAVRWLVAGAA
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA