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The map label for this gene is yfdE [H]

Identifier: 238920063

GI number: 238920063

Start: 2095663

End: 2096856

Strand: Direct

Name: yfdE [H]

Synonym: NT01EI_2168

Alternate gene names: 238920063

Gene position: 2095663-2096856 (Clockwise)

Preceding gene: 238920062

Following gene: 238920064

Centisome position: 54.97

GC content: 61.39

Gene sequence:

>1194_bases
ATGAAGAATCAGACCCTTGGTGATTTAGTGGTACTGGACATGACCCGCGTACTGGCCGGGCCTTTCAGCGGCATGCTGCT
GGCGGATATGGGCGCACACGTCATCAAAATTGAGACGCCGGAGCACGGCGATGACAGCCGCAGCTTTGCCCCGTTTATTA
ACGGAGAAAGCGCCTATTACATGAATCTGAACCGTAATAAACAGGGCATCACCCTGAATCTGAAGGATCCCGACGGCGTC
GCCCTCTTCCTGCGTCTGGTGGCCAAGGCCGACATTCTGATCGAGAACTTTCGCCCCAATACCATGGAAAAGCTGGGCAT
CGGCTATGAGAAGCTAAAAGAGATCAACCCGCGTCTGGTGTATGGCTGCGTGTCGGGATTCGGCCACTACGGCCCCTATT
CGGCACGCGCCGGTTACGACATTATCGGCCAGGCGATGGGTGGACTGATGAGTACCACCGGCTGGCCGGACGGCGAGCCG
ACCCGCTGCGGCACCGCGATTTCCGACGTGCTGGCCGGCATGTTCATGACCATCGGCGTCCTGGCCGCCCACCACCGTGC
CAAGATCACCGGTCAGGGGCAGAAGGTCGATGTCGCGCTGGTCGATTCGGTGGTCGCCGGTCTGGAGATCATCAATCAGA
TCTACCTCAGCAGCGGACAGCTGCCGGGGCGCAACGGTAACCGCTACGAGTCCATTTATCCCTACGACTCGTTTAAGTGT
CAGGACGGCAGCATGGTGATCGGCGCCGGCAACGACAAGCTGTACCACGCGCTGTGCGAGCTGATGGAGATGCCCGAACT
GATCAGCGACGCGCGCTTCCTGACCAACCCGCTGCGCGTCCAGCATCACCGCGAGCTAAAGATACGGATAGAGCAGTGGC
TGAGCGATAAAACCATCGATCGGGCCACCACCATGATCCTGGAGGCCGGCATCCCCGCCGGGCCGATCAACACCATCGAC
CGGGTGGTCAACGATCCGCATATCGCCGGCGCGCGGCAGATGTTTGTCCCGATGCACCATCCCATCGCCGGCGAGGTCCG
CGTCACCGGCAACCCGATCAAGCTCAGCGACGATCGCTACCTTCCCCCGCGCTCCTCTCCCCGGCTCGGAGAGCACACCG
CCGAGATCCTGCAGCGCTACCTGGGGCTAAGCGCGCAGGAGATCGAGCGCCTGACACGCCAGGGGGCGCTATGA

Upstream 100 bases:

>100_bases
CATTGAATTAAAAACATCTCTCTCCAGGTAAAAGCTGGCACGTAACCTGCTCCTGCTATGGCGACACTGAGTTAACGCCA
TAACGGAGAGAGTAATTGCA

Downstream 100 bases:

>100_bases
ACCACGCGATACGGAGAGCCTGATGATGACCGAAATGCGAATGTGTGACTGGCCGACTCAGGTTAGCCTGACCGAAGTAT
GCCCGCGCGACGGGCTACAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKNQTLGDLVVLDMTRVLAGPFSGMLLADMGAHVIKIETPEHGDDSRSFAPFINGESAYYMNLNRNKQGITLNLKDPDGV
ALFLRLVAKADILIENFRPNTMEKLGIGYEKLKEINPRLVYGCVSGFGHYGPYSARAGYDIIGQAMGGLMSTTGWPDGEP
TRCGTAISDVLAGMFMTIGVLAAHHRAKITGQGQKVDVALVDSVVAGLEIINQIYLSSGQLPGRNGNRYESIYPYDSFKC
QDGSMVIGAGNDKLYHALCELMEMPELISDARFLTNPLRVQHHRELKIRIEQWLSDKTIDRATTMILEAGIPAGPINTID
RVVNDPHIAGARQMFVPMHHPIAGEVRVTGNPIKLSDDRYLPPRSSPRLGEHTAEILQRYLGLSAQEIERLTRQGAL

Sequences:

>Translated_397_residues
MKNQTLGDLVVLDMTRVLAGPFSGMLLADMGAHVIKIETPEHGDDSRSFAPFINGESAYYMNLNRNKQGITLNLKDPDGV
ALFLRLVAKADILIENFRPNTMEKLGIGYEKLKEINPRLVYGCVSGFGHYGPYSARAGYDIIGQAMGGLMSTTGWPDGEP
TRCGTAISDVLAGMFMTIGVLAAHHRAKITGQGQKVDVALVDSVVAGLEIINQIYLSSGQLPGRNGNRYESIYPYDSFKC
QDGSMVIGAGNDKLYHALCELMEMPELISDARFLTNPLRVQHHRELKIRIEQWLSDKTIDRATTMILEAGIPAGPINTID
RVVNDPHIAGARQMFVPMHHPIAGEVRVTGNPIKLSDDRYLPPRSSPRLGEHTAEILQRYLGLSAQEIERLTRQGAL
>Mature_397_residues
MKNQTLGDLVVLDMTRVLAGPFSGMLLADMGAHVIKIETPEHGDDSRSFAPFINGESAYYMNLNRNKQGITLNLKDPDGV
ALFLRLVAKADILIENFRPNTMEKLGIGYEKLKEINPRLVYGCVSGFGHYGPYSARAGYDIIGQAMGGLMSTTGWPDGEP
TRCGTAISDVLAGMFMTIGVLAAHHRAKITGQGQKVDVALVDSVVAGLEIINQIYLSSGQLPGRNGNRYESIYPYDSFKC
QDGSMVIGAGNDKLYHALCELMEMPELISDARFLTNPLRVQHHRELKIRIEQWLSDKTIDRATTMILEAGIPAGPINTID
RVVNDPHIAGARQMFVPMHHPIAGEVRVTGNPIKLSDDRYLPPRSSPRLGEHTAEILQRYLGLSAQEIERLTRQGAL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=388, Percent_Identity=37.3711340206186, Blast_Score=291, Evalue=6e-79,
Organism=Homo sapiens, GI300863124, Length=413, Percent_Identity=35.5932203389831, Blast_Score=285, Evalue=7e-77,
Organism=Homo sapiens, GI300863126, Length=388, Percent_Identity=34.020618556701, Blast_Score=245, Evalue=6e-65,
Organism=Homo sapiens, GI13376042, Length=413, Percent_Identity=32.4455205811138, Blast_Score=236, Evalue=2e-62,
Organism=Homo sapiens, GI42794625, Length=392, Percent_Identity=28.8265306122449, Blast_Score=135, Evalue=6e-32,
Organism=Homo sapiens, GI266456254, Length=391, Percent_Identity=28.3887468030691, Blast_Score=135, Evalue=7e-32,
Organism=Homo sapiens, GI266458393, Length=302, Percent_Identity=30.4635761589404, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=32.046332046332, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=36.8055555555556, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=36.8055555555556, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI87082093, Length=375, Percent_Identity=41.0666666666667, Blast_Score=305, Evalue=3e-84,
Organism=Escherichia coli, GI1788717, Length=422, Percent_Identity=31.2796208530806, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1786222, Length=387, Percent_Identity=26.0981912144703, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=298, Percent_Identity=27.1812080536913, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=301, Percent_Identity=25.9136212624585, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24648431, Length=386, Percent_Identity=38.0829015544041, Blast_Score=278, Evalue=3e-75,
Organism=Drosophila melanogaster, GI24585488, Length=264, Percent_Identity=32.5757575757576, Blast_Score=120, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43653; Mature: 43653

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNQTLGDLVVLDMTRVLAGPFSGMLLADMGAHVIKIETPEHGDDSRSFAPFINGESAYY
CCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCEECCCCEEE
MNLNRNKQGITLNLKDPDGVALFLRLVAKADILIENFRPNTMEKLGIGYEKLKEINPRLV
EEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHEECCCCCHHHHHCCCHHHHHHCCCCEE
YGCVSGFGHYGPYSARAGYDIIGQAMGGLMSTTGWPDGEPTRCGTAISDVLAGMFMTIGV
EHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LAAHHRAKITGQGQKVDVALVDSVVAGLEIINQIYLSSGQLPGRNGNRYESIYPYDSFKC
HHHHHHEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEEE
QDGSMVIGAGNDKLYHALCELMEMPELISDARFLTNPLRVQHHRELKIRIEQWLSDKTID
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
RATTMILEAGIPAGPINTIDRVVNDPHIAGARQMFVPMHHPIAGEVRVTGNPIKLSDDRY
HHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHEEECCCCCCCEEEECCCCEEECCCCC
LPPRSSPRLGEHTAEILQRYLGLSAQEIERLTRQGAL
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKNQTLGDLVVLDMTRVLAGPFSGMLLADMGAHVIKIETPEHGDDSRSFAPFINGESAYY
CCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCEEEEEECCCCCCCCCCCCCEECCCCEEE
MNLNRNKQGITLNLKDPDGVALFLRLVAKADILIENFRPNTMEKLGIGYEKLKEINPRLV
EEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHEECCCCCHHHHHCCCHHHHHHCCCCEE
YGCVSGFGHYGPYSARAGYDIIGQAMGGLMSTTGWPDGEPTRCGTAISDVLAGMFMTIGV
EHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LAAHHRAKITGQGQKVDVALVDSVVAGLEIINQIYLSSGQLPGRNGNRYESIYPYDSFKC
HHHHHHEEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCEEE
QDGSMVIGAGNDKLYHALCELMEMPELISDARFLTNPLRVQHHRELKIRIEQWLSDKTID
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHH
RATTMILEAGIPAGPINTIDRVVNDPHIAGARQMFVPMHHPIAGEVRVTGNPIKLSDDRY
HHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCHHHEEECCCCCCCEEEECCCCEEECCCCC
LPPRSSPRLGEHTAEILQRYLGLSAQEIERLTRQGAL
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]