| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238920035
Identifier: 238920035
GI number: 238920035
Start: 2069606
End: 2070052
Strand: Reverse
Name: 238920035
Synonym: NT01EI_2138
Alternate gene names: NA
Gene position: 2070052-2069606 (Counterclockwise)
Preceding gene: 238920038
Following gene: 238920033
Centisome position: 54.3
GC content: 43.85
Gene sequence:
>447_bases GTGCGTCCGTTTGTCAAAAGTAATAAAAATGATTTTGTTGACGCTGAAGCAATATGTGAAGCCGCATCCCGACCATCCAT GCGTTTTGTCCAGCCTAGAACAGAAGGACAGCAGGCGATGCGAGCATTGCATCGGGTCAGGGAATCACTTATCAGAGACA AGGTGAAAACAACCAACCAGATGCACGGTTTTTTACTGGAATTTGGTATCAGTCTGCCAATAGGCGATTCAGTCATTAAG CGGTTGTCCCTGGTGCTCGCGGAACATGAAATACCTGAATATTTGAGCCGTTTGCTGATGAAATTGCATGCCCACTATCT TTATCTTGTTGAGCAAATAACAGAGCTGGAGTCAGAATTAAACCAGTCAATCAAAGTCGATGATACTGCTCAACGTATTA TGAGACCCTGTACACGATTCTGTGTAAATGCCTTTTCTCAGAAGTGA
Upstream 100 bases:
>100_bases AAGCCCGTAAACCCGGCGTCAAAGAGAGGATTGTTGATCTGGCCTTCAACGGCTCAGGTGTTCGTGATACCGCTCGTATT CTCAATTCTCTCCGCAATTC
Downstream 100 bases:
>100_bases CCGTCCAGACGATCACCGAACTCGATAATAAAGCGGCTCATTGCCATACGCCAGTCCCTCAGCGGCATGGTCCATTTCTG TGATGCCGCCTGGATCGCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 148; Mature: 148
Protein sequence:
>148_residues MRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEGQQAMRALHRVRESLIRDKVKTTNQMHGFLLEFGISLPIGDSVIK RLSLVLAEHEIPEYLSRLLMKLHAHYLYLVEQITELESELNQSIKVDDTAQRIMRPCTRFCVNAFSQK
Sequences:
>Translated_148_residues MRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEGQQAMRALHRVRESLIRDKVKTTNQMHGFLLEFGISLPIGDSVIK RLSLVLAEHEIPEYLSRLLMKLHAHYLYLVEQITELESELNQSIKVDDTAQRIMRPCTRFCVNAFSQK >Mature_148_residues MRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEGQQAMRALHRVRESLIRDKVKTTNQMHGFLLEFGISLPIGDSVIK RLSLVLAEHEIPEYLSRLLMKLHAHYLYLVEQITELESELNQSIKVDDTAQRIMRPCTRFCVNAFSQK
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase IS1111A/IS1328/IS1533 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 17118; Mature: 17118
Theoretical pI: Translated: 8.87; Mature: 8.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEGQQAMRALHRVRESLIRDKVKTTNQ CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MHGFLLEFGISLPIGDSVIKRLSLVLAEHEIPEYLSRLLMKLHAHYLYLVEQITELESEL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQSIKVDDTAQRIMRPCTRFCVNAFSQK HCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRPFVKSNKNDFVDAEAICEAASRPSMRFVQPRTEGQQAMRALHRVRESLIRDKVKTTNQ CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MHGFLLEFGISLPIGDSVIKRLSLVLAEHEIPEYLSRLLMKLHAHYLYLVEQITELESEL HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQSIKVDDTAQRIMRPCTRFCVNAFSQK HCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7607411 [H]