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The map label for this gene is ydhB [H]

Identifier: 238920009

GI number: 238920009

Start: 2032938

End: 2033852

Strand: Reverse

Name: ydhB [H]

Synonym: NT01EI_2112

Alternate gene names: 238920009

Gene position: 2033852-2032938 (Counterclockwise)

Preceding gene: 238920012

Following gene: 238920003

Centisome position: 53.35

GC content: 63.06

Gene sequence:

>915_bases
ATGTGGTCAGAATATTCGCTGGAGGTAGTGGATGCGGTTGCGCGCACCGGGAGCTTCAGCGCCGCGGCGCAGGAGCTGCA
CAGGGTGCCCTCTGCCGTCAGCTATACCGTACGTCAGCTGGAGAGCTGGCTGGCGGTACCGCTGTTTGAACGGCGTCACC
GTGACGTGGAATTGACCGAGGCCGGGGCGCTTTTTGTCGATGAGGCCCGCAGTATTATCAAAAAAATGCATGCCACCCGG
CGTCAGTGCCAACAGGTGGCTAACGGCTGGCGCGGACAGTTCCATGTTGCGGTCGATCGCATCGTCCGTCCACAGCGCTG
CCAGCAGCTGGTGGTGGATTTTTACCGTCACTTTCCCGATATGGAGCTGATGATCCACAGCGAGGTCTTTAACGGCGTGT
GGGATGCGCTGATCGATGGACGGGTCGAGGTGGCGATCGGCGCGACGCGAGCGGTGCCCGCCGGTGGGCGCTATGCATTC
CGCGATATGGGGTTTTTGCACTGGCGCTGTGTGGTCAGCCCCGACCACCCGCTGGCTGCGTTCGACGGCGAGCTAGACGA
CGATCGCCTGCGGCCATTTCCGGCACTGAGCATCGAAGATACCTCGCGGACGCTACCCAAACGGGATACCTGGCTGCTCG
ATAACCAGCGGCGTCTGGTGGCGCCGGACTGGCCGTGCGCCATCGACTGTCTGGAGGCCGGGCTGTGCGTCGGCCTGATG
CCGGCCCATGCCGCCGAACCGCTGATCGCCGCCGGGCGTCTGTATGCACTGCGTCTGTGTCAGTCGTTTCCTGACAGTGC
CTGCTGCGTGACCTGGCAGGATCACAGCTGCTCACCGGCCCTTGAGTGGCTGCTGGCCTATCTGGGCGATACCCGTACCA
TGAATCAGGAGTGGCTTATGCCGCAGCCAGTGTGA

Upstream 100 bases:

>100_bases
GTGACGGGGAGAGTTTATGAGCTGACGTCAGCGTTGTGAAACGCTATTATTTGGCATAATGGATGAAATTTTTTGAAAGC
AAGGTGTCGAGGGGCTGAGT

Downstream 100 bases:

>100_bases
CGATCCGCCCACCGGGCGGAGCATCGGCGCGATCGTGGGTGACCAGGATCGCGGGAATGGCGCGTTCGGCGATCTGCTGA
TAGACCCAGTGGCGAAAACG

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MWSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLESWLAVPLFERRHRDVELTEAGALFVDEARSIIKKMHATR
RQCQQVANGWRGQFHVAVDRIVRPQRCQQLVVDFYRHFPDMELMIHSEVFNGVWDALIDGRVEVAIGATRAVPAGGRYAF
RDMGFLHWRCVVSPDHPLAAFDGELDDDRLRPFPALSIEDTSRTLPKRDTWLLDNQRRLVAPDWPCAIDCLEAGLCVGLM
PAHAAEPLIAAGRLYALRLCQSFPDSACCVTWQDHSCSPALEWLLAYLGDTRTMNQEWLMPQPV

Sequences:

>Translated_304_residues
MWSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLESWLAVPLFERRHRDVELTEAGALFVDEARSIIKKMHATR
RQCQQVANGWRGQFHVAVDRIVRPQRCQQLVVDFYRHFPDMELMIHSEVFNGVWDALIDGRVEVAIGATRAVPAGGRYAF
RDMGFLHWRCVVSPDHPLAAFDGELDDDRLRPFPALSIEDTSRTLPKRDTWLLDNQRRLVAPDWPCAIDCLEAGLCVGLM
PAHAAEPLIAAGRLYALRLCQSFPDSACCVTWQDHSCSPALEWLLAYLGDTRTMNQEWLMPQPV
>Mature_304_residues
MWSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLESWLAVPLFERRHRDVELTEAGALFVDEARSIIKKMHATR
RQCQQVANGWRGQFHVAVDRIVRPQRCQQLVVDFYRHFPDMELMIHSEVFNGVWDALIDGRVEVAIGATRAVPAGGRYAF
RDMGFLHWRCVVSPDHPLAAFDGELDDDRLRPFPALSIEDTSRTLPKRDTWLLDNQRRLVAPDWPCAIDCLEAGLCVGLM
PAHAAEPLIAAGRLYALRLCQSFPDSACCVTWQDHSCSPALEWLLAYLGDTRTMNQEWLMPQPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787949, Length=299, Percent_Identity=70.5685618729097, Blast_Score=451, Evalue=1e-128,
Organism=Escherichia coli, GI1786508, Length=285, Percent_Identity=29.4736842105263, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1786713, Length=293, Percent_Identity=30.7167235494881, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=26.7148014440433, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789492, Length=280, Percent_Identity=30, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI157672245, Length=136, Percent_Identity=33.8235294117647, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790399, Length=142, Percent_Identity=28.169014084507, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786401, Length=171, Percent_Identity=29.8245614035088, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788748, Length=145, Percent_Identity=26.8965517241379, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=165, Percent_Identity=24.2424242424242, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34443; Mature: 34443

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLESWLAVPLFERRHRDVELTE
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHCCCCCEEHH
AGALFVDEARSIIKKMHATRRQCQQVANGWRGQFHVAVDRIVRPQRCQQLVVDFYRHFPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHCCC
MELMIHSEVFNGVWDALIDGRVEVAIGATRAVPAGGRYAFRDMGFLHWRCVVSPDHPLAA
CEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHCCCEEEEEEEECCCCCCEE
FDGELDDDRLRPFPALSIEDTSRTLPKRDTWLLDNQRRLVAPDWPCAIDCLEAGLCVGLM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCHHHHHHHHCHHHCCC
PAHAAEPLIAAGRLYALRLCQSFPDSACCVTWQDHSCSPALEWLLAYLGDTRTMNQEWLM
CHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
PQPV
CCCC
>Mature Secondary Structure
MWSEYSLEVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLESWLAVPLFERRHRDVELTE
CCCCHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHCCCCCEEHH
AGALFVDEARSIIKKMHATRRQCQQVANGWRGQFHVAVDRIVRPQRCQQLVVDFYRHFPD
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHCCC
MELMIHSEVFNGVWDALIDGRVEVAIGATRAVPAGGRYAFRDMGFLHWRCVVSPDHPLAA
CEEEHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHCCCEEEEEEEECCCCCCEE
FDGELDDDRLRPFPALSIEDTSRTLPKRDTWLLDNQRRLVAPDWPCAIDCLEAGLCVGLM
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEECCCCCHHHHHHHHCHHHCCC
PAHAAEPLIAAGRLYALRLCQSFPDSACCVTWQDHSCSPALEWLLAYLGDTRTMNQEWLM
CHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
PQPV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]