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The map label for this gene is ynjD [H]

Identifier: 238920008

GI number: 238920008

Start: 2032580

End: 2032957

Strand: Direct

Name: ynjD [H]

Synonym: NT01EI_2113

Alternate gene names: 238920008

Gene position: 2032580-2032957 (Clockwise)

Preceding gene: 238920007

Following gene: 238920010

Centisome position: 53.32

GC content: 65.87

Gene sequence:

>378_bases
TTGTTCCAGGATGACCTACTCTTCCCCCACCTTACCGTCGGGCAGAATCTCCGTTTCGCCCTCTCCCCACAGGCCGCGCC
GGATGCCGTCGCCCAGGCACTACGCCAGGCGGATATGAAAGAGATGGCTGCGGCTTATCCGGCCACACTCTCCGGGGGGC
AGCGCGCACGCATCAGTGTACTGCGTACCCTTCTTGCCGCACCGGCGGCCCTGTTGCTCGATGAGCCCTTCTCCCGGCTG
GACGCCCCGTTGCGCCGCCGTTTTCGCCACTGGGTCTATCAGCAGATCGCCGAACGCGCCATTCCCGCGATCCTGGTCAC
CCACGATCGCGCCGATGCTCCGCCCGGTGGGCGGATCGTCACACTGGCTGCGGCATAA

Upstream 100 bases:

>100_bases
CGCGGGCCAGCTTCCCCTCCCGCTACGCGCCGAGGGTCGTGTATGGCTGGATCGGAACGAGCTCACACGTACACCGCCCT
GGCGCCGGGGAGTCGGGCTG

Downstream 100 bases:

>100_bases
GCCACTCCTGATTCATGGTACGGGTATCGCCCAGATAGGCCAGCAGCCACTCAAGGGCCGGTGAGCAGCTGTGATCCTGC
CAGGTCACGCAGCAGGCACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MFQDDLLFPHLTVGQNLRFALSPQAAPDAVAQALRQADMKEMAAAYPATLSGGQRARISVLRTLLAAPAALLLDEPFSRL
DAPLRRRFRHWVYQQIAERAIPAILVTHDRADAPPGGRIVTLAAA

Sequences:

>Translated_125_residues
MFQDDLLFPHLTVGQNLRFALSPQAAPDAVAQALRQADMKEMAAAYPATLSGGQRARISVLRTLLAAPAALLLDEPFSRL
DAPLRRRFRHWVYQQIAERAIPAILVTHDRADAPPGGRIVTLAAA
>Mature_125_residues
MFQDDLLFPHLTVGQNLRFALSPQAAPDAVAQALRQADMKEMAAAYPATLSGGQRARISVLRTLLAAPAALLLDEPFSRL
DAPLRRRFRHWVYQQIAERAIPAILVTHDRADAPPGGRIVTLAAA

Specific function: Probably part of a binding-protein-dependent transport system YnjCD. Probably responsible for energy coupling to the transport system [H]

COG id: COG4136

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=130, Percent_Identity=36.1538461538462, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788053, Length=127, Percent_Identity=49.6062992125984, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI87081791, Length=128, Percent_Identity=39.84375, Blast_Score=86, Evalue=7e-19,
Organism=Escherichia coli, GI1788761, Length=133, Percent_Identity=37.593984962406, Blast_Score=84, Evalue=3e-18,
Organism=Escherichia coli, GI1786253, Length=118, Percent_Identity=38.135593220339, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI87081709, Length=118, Percent_Identity=35.5932203389831, Blast_Score=81, Evalue=3e-17,
Organism=Escherichia coli, GI1787370, Length=118, Percent_Identity=37.2881355932203, Blast_Score=80, Evalue=5e-17,
Organism=Escherichia coli, GI1790467, Length=118, Percent_Identity=38.9830508474576, Blast_Score=77, Evalue=5e-16,
Organism=Escherichia coli, GI1787712, Length=118, Percent_Identity=33.8983050847458, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787029, Length=115, Percent_Identity=35.6521739130435, Blast_Score=71, Evalue=3e-14,
Organism=Escherichia coli, GI87082267, Length=118, Percent_Identity=33.8983050847458, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1787164, Length=113, Percent_Identity=37.1681415929204, Blast_Score=66, Evalue=8e-13,
Organism=Escherichia coli, GI1789032, Length=118, Percent_Identity=32.2033898305085, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1788644, Length=116, Percent_Identity=36.2068965517241, Blast_Score=64, Evalue=4e-12,
Organism=Escherichia coli, GI1787089, Length=115, Percent_Identity=34.7826086956522, Blast_Score=63, Evalue=5e-12,
Organism=Escherichia coli, GI1789672, Length=115, Percent_Identity=32.1739130434783, Blast_Score=63, Evalue=5e-12,
Organism=Escherichia coli, GI1786563, Length=118, Percent_Identity=33.0508474576271, Blast_Score=63, Evalue=7e-12,
Organism=Escherichia coli, GI1786872, Length=115, Percent_Identity=33.9130434782609, Blast_Score=61, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 13649; Mature: 13649

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQDDLLFPHLTVGQNLRFALSPQAAPDAVAQALRQADMKEMAAAYPATLSGGQRARISV
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LRTLLAAPAALLLDEPFSRLDAPLRRRFRHWVYQQIAERAIPAILVTHDRADAPPGGRIV
HHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEE
TLAAA
EEECC
>Mature Secondary Structure
MFQDDLLFPHLTVGQNLRFALSPQAAPDAVAQALRQADMKEMAAAYPATLSGGQRARISV
CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
LRTLLAAPAALLLDEPFSRLDAPLRRRFRHWVYQQIAERAIPAILVTHDRADAPPGGRIV
HHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEE
TLAAA
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]