Definition Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession NC_012779
Length 3,812,315

Click here to switch to the map view.

The map label for this gene is 238919925

Identifier: 238919925

GI number: 238919925

Start: 1954267

End: 1954614

Strand: Reverse

Name: 238919925

Synonym: NT01EI_2029

Alternate gene names: NA

Gene position: 1954614-1954267 (Counterclockwise)

Preceding gene: 238919926

Following gene: 238919924

Centisome position: 51.27

GC content: 68.68

Gene sequence:

>348_bases
ATGGACGTGAAACCGAGCGTCAGTTTTCAAGAGCGTGCCAGCATCAACAACGGGCTGCGGGCGCTGAGCCGTGAGCGGGG
CTGCGTTGGCGGCAGTACCCAGATGAGCCGCGTGATCATCGTCGCCGCCGGCGCCGACTGGCACACGCTGCGCGGCCTGG
AGCGTCGCCTGCTGCAGCTGTTCCCGCGGGAGGGGGATACCCAGGCGGCCATCAGCGCCCGGCTGCGGCAGGTCAGCGTG
CTGCGCCACGGGCTGGTCAAGCAGGTGCGCAAGGTGCGCAATCCCGACAGCGGCAAAACGGTCTGGTTTTACCGACTGGT
GCCCGCCCGCCGCGATGGGAGCGTGTGA

Upstream 100 bases:

>100_bases
AGGCGCGGCGGCTGTGTACTCCGATGGATCAGCCGCCGCTGGCAGCGCGTTACCGCGGCGCCAGAGTGTGAGCGCCGACA
TGAGACAGGGAGGAGAGACG

Downstream 100 bases:

>100_bases
TGGTGAAATTTTCGCCTGTGCGCCACGCTGCGGCGTTTTTAGGATATCAGCCATACCAACCCACGGCATTGATGGCTACG
CCGCGCCTGAGCCATTCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MDVKPSVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQLFPREGDTQAAISARLRQVSV
LRHGLVKQVRKVRNPDSGKTVWFYRLVPARRDGSV

Sequences:

>Translated_115_residues
MDVKPSVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQLFPREGDTQAAISARLRQVSV
LRHGLVKQVRKVRNPDSGKTVWFYRLVPARRDGSV
>Mature_115_residues
MDVKPSVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQLFPREGDTQAAISARLRQVSV
LRHGLVKQVRKVRNPDSGKTVWFYRLVPARRDGSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 12866; Mature: 12866

Theoretical pI: Translated: 12.14; Mature: 12.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVKPSVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
FPREGDTQAAISARLRQVSVLRHGLVKQVRKVRNPDSGKTVWFYRLVPARRDGSV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MDVKPSVSFQERASINNGLRALSRERGCVGGSTQMSRVIIVAAGADWHTLRGLERRLLQL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
FPREGDTQAAISARLRQVSVLRHGLVKQVRKVRNPDSGKTVWFYRLVPARRDGSV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA