| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919906
Identifier: 238919906
GI number: 238919906
Start: 1939747
End: 1941861
Strand: Reverse
Name: 238919906
Synonym: NT01EI_2010
Alternate gene names: NA
Gene position: 1941861-1939747 (Counterclockwise)
Preceding gene: 238919907
Following gene: 238919903
Centisome position: 50.94
GC content: 61.99
Gene sequence:
>2115_bases ATGACCGATCCCTTTTCTTCCCCGGATATTTCGACGGCGCCCGATCGTCAGGGCCAGTTCACCCTGGCTCAGCTGCTGTC TATCACGGCCGATATTCATCATCAGCCGGATTGGCGTTCGGCGGCCAATAAGGCCTGTGCCTACTATGACGGCGAGCAGC TGCCGCCGGAGCTGATTGCCACGCTGCTGGAGCGCAGTCAGCCGTTGACCATGCATAACCTGATCGCGCCGACGGTAGAC GGCGTGCTGGGCATGGAGGCCAAAACCCGCACCGAGCTGATGGTGGTAGCCGATGATCCGCAGCCGGAGTTTGAGGCATT GGCCGAGGCGGTGAATGCCGAGTTCGCCGATGCCTGTCGCCTGGCCAATCTGGGCAAGGCGCGCAGCGATGCCTATGCCG GTATGTTAAAAGCCGGGCTGGAATGGGTGGAGGTGCGGCGCAGCGACAATATCTTTGGGCCGCGCTATAGGGCGGGTACG GTACACCGCAACGAGGTGTATTGGGATTGGCACAGCCGGGAGCCGGATCTGAGCGACTGCCGCTGGCTGCTGCGTCGCCG CTGGATGGATTTGGACGAGGCACTGGCCACGTTCCCCGCCAAGGCAGCGATACTCCAGAATGCCCGTATGGATTGGCGCG GTTTTATCGATACCGGGCTGGCCGAGGGGCTGGATGCCGATCTGGTCGCGGCCTATGAGGAGTATCAGCAGTACAGCCGC AGGGAGCTGGAGTGGTTGAGCAGCGATCGGCAGCGGGTGCTGCTGCAGGTGGTTTACTATCGTAGCTGGGTGACGTTGCC GGTGATGACGTTGGCCAACGGACGCGCCCTTGAGTATCAGGCTGAAAACCCACTGCACGCCGCGGCACTGGCGATGGGGA GAGTGCAGGTACAGATGGCGCGCAGCAGCCGTATCCGCGAGGCCTGGTTTGCGGGGCCGCACCAGTTGGTGGATAGGCCC TGCACGGCGCCGCAGGGGATGTTTCCGCTGATCCCGTTCTGGGGCTACCGCAAAGATCGCAACGGGGCCCCCTATGGTCT GGTCAGCCGGGCGATACCGGCGCAGGACGAGGTGAATTTCCGGCGGATTAAGCTGACGTTTTTACTGACCGCTAAGCGGG TCATCATGGATGATGATGCGGTGAATATGAGTCGGAAGCAGGTGCAGGAAGAGGTGGAGCGGCCGGATGGACTGATTATT CTGAACCCCGATCGCCGCAATAAGACCACCATCGCCCAGTCGCTGGAGGTGCAGCAGGACTTTCAGGTGGCGCAGCAGCA GTTTCAGGTGATGCAGGACTCCATGAAGCTGATCCAGGATGGCATGGGGGTCTATTCCGCCTTTCTGGGGCAGAACTCTA ACGCCACCTCCGGCGTGGCCATCAGTAATCTGGTCGAGCAGGGGGCGACCACCCTGGCCGAGCTGAATGACAACTATCAG TTCGCCTGCCAGCAGGTCGGGCAGCTGCTGTTGGGCTATCTGTTGGAGGATTTGGCACAGGTGCGTAACCACACCATTGT CGTGAACCGTGACGATGCGCGCCGGCGGAAAAGCGTGGCGATCAATGTTGAGGGGCGCGACGGCATGAGTAATGATATTG CCCGTCTGCGCGCCCATATTGCGCTGGCGCCGATCCAGCAGACGCCAGCCTACCGTTCTCAGCTGGCGGAGCGGCTGGGG CAGGTGGTGGCTGGTCTGCCGCCGCAGGTGCAGGCGGCGGTGCTGGATCTGTGGATTTCGCTGCTGGATATTCCCAATAA GAGCGAGTTTGTCGAGCGGATCCGTCAGGCGGTGGGCATGGCCAAGTCAGCCGATGAGATGACGCCGGAGGAGCAGGAGG CGGCCGCCCAGCAGCAGCAGGTGGAGCAGCAACAGCTGGCGCTGGCGATGCGCGAACTGGAGGCCAAGGTGGGTAAACTG GAGGCCGAAGCCCAGCGTGCGGCGGCGTCGGCGCAGCGTGAGCAGGCACAGGCCGAGGGGCAGCGCTTCCATGATATGAA AACACAGGCGGAAACAGGGCAGATTTTGCAGGGAATGCAGCAGGATGCTCAGGTGGCCCGTCAGCAGTTGTTAACCCTTA TCGAGCAGCAGATTGCCGCGCTGCCATTGCATTAG
Upstream 100 bases:
>100_bases AGGTCATGAGCTATGCCCTGGCCCAGGAGATGCGCGCCCGGATGCCGGCGCGCAGACAGCCGGAGCCCATTAAACATCAG CCAGCCCACTGGATGACCCG
Downstream 100 bases:
>100_bases GGTAAAAAGTGAGCTAATTTGCGAACGATGACCCGCCTCGCACTTTTTGCGGGTTTTTTGTTTTTAGGTGGCTAACGACT GTCTGCCGCTTGGTACACCT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Portal Protein; Phage Associated Protein
Number of amino acids: Translated: 704; Mature: 703
Protein sequence:
>704_residues MTDPFSSPDISTAPDRQGQFTLAQLLSITADIHHQPDWRSAANKACAYYDGEQLPPELIATLLERSQPLTMHNLIAPTVD GVLGMEAKTRTELMVVADDPQPEFEALAEAVNAEFADACRLANLGKARSDAYAGMLKAGLEWVEVRRSDNIFGPRYRAGT VHRNEVYWDWHSREPDLSDCRWLLRRRWMDLDEALATFPAKAAILQNARMDWRGFIDTGLAEGLDADLVAAYEEYQQYSR RELEWLSSDRQRVLLQVVYYRSWVTLPVMTLANGRALEYQAENPLHAAALAMGRVQVQMARSSRIREAWFAGPHQLVDRP CTAPQGMFPLIPFWGYRKDRNGAPYGLVSRAIPAQDEVNFRRIKLTFLLTAKRVIMDDDAVNMSRKQVQEEVERPDGLII LNPDRRNKTTIAQSLEVQQDFQVAQQQFQVMQDSMKLIQDGMGVYSAFLGQNSNATSGVAISNLVEQGATTLAELNDNYQ FACQQVGQLLLGYLLEDLAQVRNHTIVVNRDDARRRKSVAINVEGRDGMSNDIARLRAHIALAPIQQTPAYRSQLAERLG QVVAGLPPQVQAAVLDLWISLLDIPNKSEFVERIRQAVGMAKSADEMTPEEQEAAAQQQQVEQQQLALAMRELEAKVGKL EAEAQRAAASAQREQAQAEGQRFHDMKTQAETGQILQGMQQDAQVARQQLLTLIEQQIAALPLH
Sequences:
>Translated_704_residues MTDPFSSPDISTAPDRQGQFTLAQLLSITADIHHQPDWRSAANKACAYYDGEQLPPELIATLLERSQPLTMHNLIAPTVD GVLGMEAKTRTELMVVADDPQPEFEALAEAVNAEFADACRLANLGKARSDAYAGMLKAGLEWVEVRRSDNIFGPRYRAGT VHRNEVYWDWHSREPDLSDCRWLLRRRWMDLDEALATFPAKAAILQNARMDWRGFIDTGLAEGLDADLVAAYEEYQQYSR RELEWLSSDRQRVLLQVVYYRSWVTLPVMTLANGRALEYQAENPLHAAALAMGRVQVQMARSSRIREAWFAGPHQLVDRP CTAPQGMFPLIPFWGYRKDRNGAPYGLVSRAIPAQDEVNFRRIKLTFLLTAKRVIMDDDAVNMSRKQVQEEVERPDGLII LNPDRRNKTTIAQSLEVQQDFQVAQQQFQVMQDSMKLIQDGMGVYSAFLGQNSNATSGVAISNLVEQGATTLAELNDNYQ FACQQVGQLLLGYLLEDLAQVRNHTIVVNRDDARRRKSVAINVEGRDGMSNDIARLRAHIALAPIQQTPAYRSQLAERLG QVVAGLPPQVQAAVLDLWISLLDIPNKSEFVERIRQAVGMAKSADEMTPEEQEAAAQQQQVEQQQLALAMRELEAKVGKL EAEAQRAAASAQREQAQAEGQRFHDMKTQAETGQILQGMQQDAQVARQQLLTLIEQQIAALPLH >Mature_703_residues TDPFSSPDISTAPDRQGQFTLAQLLSITADIHHQPDWRSAANKACAYYDGEQLPPELIATLLERSQPLTMHNLIAPTVDG VLGMEAKTRTELMVVADDPQPEFEALAEAVNAEFADACRLANLGKARSDAYAGMLKAGLEWVEVRRSDNIFGPRYRAGTV HRNEVYWDWHSREPDLSDCRWLLRRRWMDLDEALATFPAKAAILQNARMDWRGFIDTGLAEGLDADLVAAYEEYQQYSRR ELEWLSSDRQRVLLQVVYYRSWVTLPVMTLANGRALEYQAENPLHAAALAMGRVQVQMARSSRIREAWFAGPHQLVDRPC TAPQGMFPLIPFWGYRKDRNGAPYGLVSRAIPAQDEVNFRRIKLTFLLTAKRVIMDDDAVNMSRKQVQEEVERPDGLIIL NPDRRNKTTIAQSLEVQQDFQVAQQQFQVMQDSMKLIQDGMGVYSAFLGQNSNATSGVAISNLVEQGATTLAELNDNYQF ACQQVGQLLLGYLLEDLAQVRNHTIVVNRDDARRRKSVAINVEGRDGMSNDIARLRAHIALAPIQQTPAYRSQLAERLGQ VVAGLPPQVQAAVLDLWISLLDIPNKSEFVERIRQAVGMAKSADEMTPEEQEAAAQQQQVEQQQLALAMRELEAKVGKLE AEAQRAAASAQREQAQAEGQRFHDMKTQAETGQILQGMQQDAQVARQQLLTLIEQQIAALPLH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79035; Mature: 78903
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDPFSSPDISTAPDRQGQFTLAQLLSITADIHHQPDWRSAANKACAYYDGEQLPPELIA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEECCCCCCCHHHHH TLLERSQPLTMHNLIAPTVDGVLGMEAKTRTELMVVADDPQPEFEALAEAVNAEFADACR HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHH LANLGKARSDAYAGMLKAGLEWVEVRRSDNIFGPRYRAGTVHRNEVYWDWHSREPDLSDC HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEEECCCCCCCHHHH RWLLRRRWMDLDEALATFPAKAAILQNARMDWRGFIDTGLAEGLDADLVAAYEEYQQYSR HHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RELEWLSSDRQRVLLQVVYYRSWVTLPVMTLANGRALEYQAENPLHAAALAMGRVQVQMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH RSSRIREAWFAGPHQLVDRPCTAPQGMFPLIPFWGYRKDRNGAPYGLVSRAIPAQDEVNF HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCE RRIKLTFLLTAKRVIMDDDAVNMSRKQVQEEVERPDGLIILNPDRRNKTTIAQSLEVQQD EEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH FQVAQQQFQVMQDSMKLIQDGMGVYSAFLGQNSNATSGVAISNLVEQGATTLAELNDNYQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH FACQQVGQLLLGYLLEDLAQVRNHTIVVNRDDARRRKSVAINVEGRDGMSNDIARLRAHI HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCEEEEECCCCCCHHHHHHHHHHH ALAPIQQTPAYRSQLAERLGQVVAGLPPQVQAAVLDLWISLLDIPNKSEFVERIRQAVGM HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC AKSADEMTPEEQEAAAQQQQVEQQQLALAMRELEAKVGKLEAEAQRAAASAQREQAQAEG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRFHDMKTQAETGQILQGMQQDAQVARQQLLTLIEQQIAALPLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TDPFSSPDISTAPDRQGQFTLAQLLSITADIHHQPDWRSAANKACAYYDGEQLPPELIA CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEECCCCCCCHHHHH TLLERSQPLTMHNLIAPTVDGVLGMEAKTRTELMVVADDPQPEFEALAEAVNAEFADACR HHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHH LANLGKARSDAYAGMLKAGLEWVEVRRSDNIFGPRYRAGTVHRNEVYWDWHSREPDLSDC HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCEEEECCCCCCCHHHH RWLLRRRWMDLDEALATFPAKAAILQNARMDWRGFIDTGLAEGLDADLVAAYEEYQQYSR HHHHHHHCCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RELEWLSSDRQRVLLQVVYYRSWVTLPVMTLANGRALEYQAENPLHAAALAMGRVQVQMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHH RSSRIREAWFAGPHQLVDRPCTAPQGMFPLIPFWGYRKDRNGAPYGLVSRAIPAQDEVNF HHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCE RRIKLTFLLTAKRVIMDDDAVNMSRKQVQEEVERPDGLIILNPDRRNKTTIAQSLEVQQD EEEEEEHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH FQVAQQQFQVMQDSMKLIQDGMGVYSAFLGQNSNATSGVAISNLVEQGATTLAELNDNYQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH FACQQVGQLLLGYLLEDLAQVRNHTIVVNRDDARRRKSVAINVEGRDGMSNDIARLRAHI HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHCCCEEEEECCCCCCHHHHHHHHHHH ALAPIQQTPAYRSQLAERLGQVVAGLPPQVQAAVLDLWISLLDIPNKSEFVERIRQAVGM HHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC AKSADEMTPEEQEAAAQQQQVEQQQLALAMRELEAKVGKLEAEAQRAAASAQREQAQAEG CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRFHDMKTQAETGQILQGMQQDAQVARQQLLTLIEQQIAALPLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA