BacMap

Definition	Edwardsiella ictaluri 93-146 chromosome, complete genome.
Accession	NC_012779
Length	3,812,315

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The map label for this gene is ydfG [H]

Identifier: 238919880

GI number: 238919880

Start: 1909897

End: 1910646

Strand: Direct

Name: ydfG [H]

Synonym: NT01EI_1984

Alternate gene names: 238919880

Gene position: 1909897-1910646 (Clockwise)

Preceding gene: 238919879

Following gene: 238919881

Centisome position: 50.1

GC content: 58.27

Gene sequence:

>750_bases
ATGAACATTTTCATTACCGGTGCTACCGCCGGGTTTGGTGCCGCGATCGCCCGTAAGTTTATCCGCCATGGTCATCACGT
TATCGCCGCCGGGCGGCGTCTGGAACGACTGGAGGCGCTACGGGATGAGCTGGGCGATGCGCTGACGGTCGTTCAGTTGG
ATGTCCGCAATCGAGCCGCTATCCAGGATACGGTAGCACATCTGACATCGGCACAGCGCAATATCGATCTGTTGGTCAAC
AACGCTGGACTGGCTCTGGGGCTGGAGCCTGCCCATCAGGCTAATATCGATGACTGGGATACCATGATCGACACCAACGT
CAAAGGCGTAGTGAACATGACTCGCGCCCTGCTGCCTGAAATGGTCACCCGCAACGCGGGTCATATTATCAATATCGGTT
CAACGGCAGGTAGTTGGCCCTACGCCGGCGGCAATGTCTATGGCGCAACCAAGGCCTTTGTCCGCCAGTTCAGCCTTGGC
CTGCGGGCCGATCTGCACGGAACCCGGATCCGGGTGAGTGACATTGAGCCCGGATTGGTCAGCGGTACCGAATTCTCCAG
CGTCCGCTTTAAAGGTGACGAGCAGCGCGTCACCCATACCTATAAAGATGCGCATGCCCTGACCGCCGACGATATCGCCG
AAGCGGTATTCTGGGTAGCGACGCTGCCCCCTCACGTCAACATCAATACGATGGAGGTGATGCCGGTCTCCCAGTCGTTC
TCACCCCTGGCAGTCTATCGCGGCGAATAG

Upstream 100 bases:

>100_bases
CTGGCATTCTAATAGTCAGTGTTCCATTGTGGTACGTAACACCAACGGTGGTGAAATGTTGCAAAGACGTGCCGAATTTA
TCCACACGCGAGGGAGTAGT

Downstream 100 bases:

>100_bases
GCATTCACCGGTTCCGGCTATGGCGTCATCGAGAAAATCATGGCAGATTGAATCAATGACGCTCTACGTGGTATGAAGCG
TACATTTCGCTGAGGACAAC

Product: NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNIFITGATAGFGAAIARKFIRHGHHVIAAGRRLERLEALRDELGDALTVVQLDVRNRAAIQDTVAHLTSAQRNIDLLVN
NAGLALGLEPAHQANIDDWDTMIDTNVKGVVNMTRALLPEMVTRNAGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLG
LRADLHGTRIRVSDIEPGLVSGTEFSSVRFKGDEQRVTHTYKDAHALTADDIAEAVFWVATLPPHVNINTMEVMPVSQSF
SPLAVYRGE

Sequences:

>Translated_249_residues
MNIFITGATAGFGAAIARKFIRHGHHVIAAGRRLERLEALRDELGDALTVVQLDVRNRAAIQDTVAHLTSAQRNIDLLVN
NAGLALGLEPAHQANIDDWDTMIDTNVKGVVNMTRALLPEMVTRNAGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLG
LRADLHGTRIRVSDIEPGLVSGTEFSSVRFKGDEQRVTHTYKDAHALTADDIAEAVFWVATLPPHVNINTMEVMPVSQSF
SPLAVYRGE
>Mature_249_residues
MNIFITGATAGFGAAIARKFIRHGHHVIAAGRRLERLEALRDELGDALTVVQLDVRNRAAIQDTVAHLTSAQRNIDLLVN
NAGLALGLEPAHQANIDDWDTMIDTNVKGVVNMTRALLPEMVTRNAGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLG
LRADLHGTRIRVSDIEPGLVSGTEFSSVRFKGDEQRVTHTYKDAHALTADDIAEAVFWVATLPPHVNINTMEVMPVSQSF
SPLAVYRGE

Specific function: Catalyzes the NADP-dependent oxidation of L-allo- threonine and L-serine [H]

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=32.1138211382114, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI150247226, Length=190, Percent_Identity=34.7368421052632, Blast_Score=98, Evalue=9e-21,
Organism=Homo sapiens, GI40548397, Length=179, Percent_Identity=34.6368715083799, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI214010158, Length=179, Percent_Identity=34.6368715083799, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI214010156, Length=179, Percent_Identity=34.6368715083799, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI22758144, Length=179, Percent_Identity=34.6368715083799, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI4557649, Length=184, Percent_Identity=32.6086956521739, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI7657478, Length=219, Percent_Identity=31.0502283105023, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI7705855, Length=191, Percent_Identity=29.8429319371728, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI22507405, Length=249, Percent_Identity=29.3172690763052, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI20149619, Length=187, Percent_Identity=31.5508021390374, Blast_Score=85, Evalue=5e-17,
Organism=Homo sapiens, GI157739938, Length=186, Percent_Identity=27.9569892473118, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI19743808, Length=180, Percent_Identity=33.8888888888889, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI10190704, Length=226, Percent_Identity=30.5309734513274, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI19923817, Length=185, Percent_Identity=28.6486486486486, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI32483357, Length=223, Percent_Identity=27.8026905829596, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI7706318, Length=257, Percent_Identity=25.6809338521401, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI5031737, Length=224, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI40254992, Length=177, Percent_Identity=28.8135593220339, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4504503, Length=180, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI119392083, Length=200, Percent_Identity=31, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=29.5238095238095, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI44680136, Length=184, Percent_Identity=27.7173913043478, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI44680133, Length=184, Percent_Identity=27.7173913043478, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI17738292, Length=184, Percent_Identity=27.7173913043478, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=29.4117647058824, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1787820, Length=247, Percent_Identity=69.2307692307692, Blast_Score=365, Evalue=1e-102,
Organism=Escherichia coli, GI87082100, Length=181, Percent_Identity=38.6740331491713, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1787335, Length=220, Percent_Identity=28.6363636363636, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786812, Length=177, Percent_Identity=28.2485875706215, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790717, Length=180, Percent_Identity=29.4444444444444, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786701, Length=182, Percent_Identity=29.6703296703297, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87082160, Length=230, Percent_Identity=26.5217391304348, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787526, Length=182, Percent_Identity=28.5714285714286, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=230, Percent_Identity=26.9565217391304, Blast_Score=84, Evalue=7e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=214, Percent_Identity=28.9719626168224, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=232, Percent_Identity=26.2931034482759, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=202, Percent_Identity=31.6831683168317, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=210, Percent_Identity=31.9047619047619, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI25152911, Length=203, Percent_Identity=31.5270935960591, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17560176, Length=189, Percent_Identity=30.1587301587302, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI115534660, Length=180, Percent_Identity=28.3333333333333, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17559552, Length=189, Percent_Identity=29.6296296296296, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646214, Length=186, Percent_Identity=29.0322580645161, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=190, Percent_Identity=31.0526315789474, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=239, Percent_Identity=25.5230125523013, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17560676, Length=238, Percent_Identity=25.6302521008403, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=190, Percent_Identity=30, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=190, Percent_Identity=31.5789473684211, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17557668, Length=189, Percent_Identity=29.1005291005291, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=189, Percent_Identity=29.1005291005291, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17563726, Length=189, Percent_Identity=27.5132275132275, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=205, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=188, Percent_Identity=28.1914893617021, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=193, Percent_Identity=26.9430051813472, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=254, Percent_Identity=37.7952755905512, Blast_Score=168, Evalue=9e-43,
Organism=Saccharomyces cerevisiae, GI6322067, Length=171, Percent_Identity=31.5789473684211, Blast_Score=82, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322227, Length=221, Percent_Identity=26.2443438914027, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322226, Length=183, Percent_Identity=25.1366120218579, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=32.8, Blast_Score=124, Evalue=5e-29,
Organism=Drosophila melanogaster, GI23397609, Length=227, Percent_Identity=31.7180616740088, Blast_Score=107, Evalue=6e-24,
Organism=Drosophila melanogaster, GI21358495, Length=225, Percent_Identity=31.5555555555556, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI281364494, Length=249, Percent_Identity=30.5220883534137, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=32.1243523316062, Blast_Score=98, Evalue=7e-21,
Organism=Drosophila melanogaster, GI24643142, Length=178, Percent_Identity=33.7078651685393, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI161076933, Length=181, Percent_Identity=32.5966850828729, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24584748, Length=181, Percent_Identity=32.5966850828729, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641388, Length=249, Percent_Identity=28.9156626506024, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641232, Length=255, Percent_Identity=27.0588235294118, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24648693, Length=248, Percent_Identity=29.8387096774194, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21355889, Length=248, Percent_Identity=29.8387096774194, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24663911, Length=249, Percent_Identity=28.9156626506024, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI28571387, Length=249, Percent_Identity=29.3172690763052, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571526, Length=182, Percent_Identity=29.6703296703297, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI116007238, Length=181, Percent_Identity=33.1491712707182, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI21357041, Length=182, Percent_Identity=28.021978021978, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=28.4, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI24644339, Length=181, Percent_Identity=28.1767955801105, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28574402, Length=186, Percent_Identity=29.0322580645161, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584744, Length=186, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24584752, Length=182, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648944, Length=233, Percent_Identity=27.0386266094421, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI21355631, Length=177, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24580925, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639444, Length=239, Percent_Identity=28.4518828451883, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45553409, Length=207, Percent_Identity=25.1207729468599, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24647948, Length=207, Percent_Identity=25.1207729468599, Blast_Score=64, Evalue=8e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27016; Mature: 27016

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIFITGATAGFGAAIARKFIRHGHHVIAAGRRLERLEALRDELGDALTVVQLDVRNRAA
CEEEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHH
IQDTVAHLTSAQRNIDLLVNNAGLALGLEPAHQANIDDWDTMIDTNVKGVVNMTRALLPE
HHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
MVTRNAGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLGLRADLHGTRIRVSDIEPGLV
HHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCC
SGTEFSSVRFKGDEQRVTHTYKDAHALTADDIAEAVFWVATLPPHVNINTMEVMPVSQSF
CCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
SPLAVYRGE
CCEEEEECC
>Mature Secondary Structure
MNIFITGATAGFGAAIARKFIRHGHHVIAAGRRLERLEALRDELGDALTVVQLDVRNRAA
CEEEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHH
IQDTVAHLTSAQRNIDLLVNNAGLALGLEPAHQANIDDWDTMIDTNVKGVVNMTRALLPE
HHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHH
MVTRNAGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLGLRADLHGTRIRVSDIEPGLV
HHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCC
SGTEFSSVRFKGDEQRVTHTYKDAHALTADDIAEAVFWVATLPPHVNINTMEVMPVSQSF
CCCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCC
SPLAVYRGE
CCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]