| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is pheT [H]
Identifier: 238919787
GI number: 238919787
Start: 1820244
End: 1822631
Strand: Direct
Name: pheT [H]
Synonym: NT01EI_1891
Alternate gene names: 238919787
Gene position: 1820244-1822631 (Clockwise)
Preceding gene: 238919786
Following gene: 238919788
Centisome position: 47.75
GC content: 59.97
Gene sequence:
>2388_bases ATGAAATTCAGTGAACTTTGGTTGCGCGAGTGGGTAAATCCTGCCATCAGCAGCGATGCATTGTCCGAACAAATTACCAT GGCTGGCCTGGAAGTGGATGGCGTAGAGCCGGTTGCCGGCGCTTTCCATGGTGTGGTGGTCGGTGAGGTGGTCGAGTGCC ATCAACATCCCAATGCCGATAAGCTACGGGTCACCAAGGTCAGCGTCGGCGGCGAGCGCTTGCTGGATATCGTCTGCGGT GCGCCGAACTGCCGTCAGGGACTGCGTGTGGCCGTTGCTACTATCGGAGCTGTTCTGCCGGGCGATTTCAAAATCAAAGC GGCTAAGCTGCGCGGCGAACCCTCCGAAGGGATGCTGTGCTCTTTCTCTGAGCTGGGTATCTGTGAGGATCACAGCGGTA TCATCGAACTGCCGCAGGATGCGCCGATCGGCTGTGATCTGCGGGAGTATCTGCAGCTGAATGACAACGCGATCGAAATC AGTGTGACCCCTAACCGGGCCGATTGCCTCGGTATTCTGGGCGTTGCCCGCGATGTCGCGGTGCTTAACCGCCTGCCGCT GAATATGCCGCAAGCGGCGCCGGTAGCGGCCAGCATCGATGAGCGCTTCCCGATCGCCGTTGAGGCGCCAGAGGCCTGCC CGCGTTACCTTGGCCGCGTGGTGCGCGGCATCGACGTCGCGGCGAAGACGCCGTTGTGGATGAGTGAAAAGCTGCGTCGC TGCGGCATTCGATCCATCGATCCGGTGGTGGACGTGACCAATTACGTTCTGCTGGAGTTGGGGCAGCCGATGCACGCCTT CGATCTCAACCGCCTGCAGGGTGGGATCGTGGTACGTATGGCCCGTGATGGGGAGACCCTGACGCTGCTGGATGGCAGCC AGGCGACGCTGGGTAGCGATACGCTGGTCATTGCCGACCATCAGCAGGCGCTGGCGTTGGGCGGCATTTTTGGCGGTGAA CATTCCGGTGTTAACGCGGAAACCCGAGACGTGCTGCTGGAGTGCGCCTATTTTAACCCGCTGGCGATTACCGGCCGCGC CCGTCGCTATGGGTTGCACACCGACGCGTCGCATCGCTATGAGCGCGGCGTCGATCCGCAGCTGCAGCAGCGTGCCATGG AGCGCGCTACCGAGCTGCTGCTGGCGCTGTGCGGCGGCCAGGCCGGTCCGGTTATGGATGTGACCAACGATGCCTACCTA CCGCAGCCGGCCAACATTGTGCTGCAGCGCAGCAAACTGGATCGTCTGATCGGCCATCATATCGATGATGTGCAGGTGCT GGATATTCTGCAGCGTCTGGGCTGCCAGGTAACGGCAGTGGATGGCGGATGGCAGGCTGTCGCGCCGAGCTGGCGTTTTG ACATGGCCATTGAAGAGGATCTGATCGAAGAGGTGGCGCGTGTCTACGGTTATAACAATATTCCGGATGTGCCACTGCGT GCTGATCTGGTGATGACCGCACACCGTGAGGCGAATCTGCCCCTGAAGCGGGTCAAGACCCTGCTGGTCGATCGTGGCTA CCAAGAGGCTATCACCTACAGCTTTGTCGATCCAAAAGTACAGGCGCTGTTGCACCCGCAGCAGCAGGCGCTGATCCTGC CAAACCCGATCTCCGTTGATATGTCCGCCATGCGCCTGTCGCTGTGGACCGGTCTGCTGGGCGCCGTGGTATATAACCAG AACCGCCAGCAGTCACGGGTGCGTCTGTTTGAAAGCGGCCTGCGCTTTGTTCCGGACGAGGGGGCGAATCTGGGGATCCG CCAGGACGTGATGCTGGCCGGGGTGATCGCCGGTCATCGCGACGAAGAGCACTGGGGCATCGAGCGCCAGGCCGTCGATT TCTACGATCTGAAGGGCGACCTGGAGGCGGTGCTGGAGCTGACCGGTAAACTGGACGCGGTGCAGTTCCGCGCCGAAGCC CACGATGCCCTGCATCCGGGGCAGAGCGCCGCGCTGTATCTGCATGGCGAGCGAATTGGTTTCATTGGCGTGGTACATCC GGAGCTGGAGCGTAAGCTGGATCTCAACGGTCGTACAGTCGTGTTTGAGGTGTGCTGGAGTGCTCTGGCAGAGCGTCTGA TTCCACAGGCGCGCGAGATCTCCCGCTATCCCGCGAACCGCCGTGATATCGCGGTTGTGGTGGCTGAAAATGTGTCGGCG GAAGATGTTTTGGCTGAGTGTAAGAAAGTTGGCGCAAATCAGGTAGTTGGCGTAAACTTATTTGACGTGTATTGTGGTAA GGGGGTTGCAGAGGGTCATAAGAGCCTCGCGATCAGTCTGGTGTTGCAGGATACCACGCGTACACTGGAAGAAGTGGAAA TTGCCGCTACCGTCGCAAAATGCGTAGAGGCGTTAAAACAGCGATTCCAAGCATCCTTGAGGGATTGA
Upstream 100 bases:
>100_bases AGCGACTGACGATGCTGCGTTACGGTGTCACTGATTTGCGCGCATTTTTCGAAAACGATCTGCGTTTCCTCAAACAGTTC AAATAAGGCAGGATTAACAC
Downstream 100 bases:
>100_bases ATCTATGGCGCTTACAAAAGCTGAAATGTCTGAACACCTGTTTGAAAAGCTTGGGCTGAGCAAACGGGACGCCAAAGACC TCGTCGAGCTGTTTTTCGAA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 795; Mature: 795
Protein sequence:
>795_residues MKFSELWLREWVNPAISSDALSEQITMAGLEVDGVEPVAGAFHGVVVGEVVECHQHPNADKLRVTKVSVGGERLLDIVCG APNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLCSFSELGICEDHSGIIELPQDAPIGCDLREYLQLNDNAIEI SVTPNRADCLGILGVARDVAVLNRLPLNMPQAAPVAASIDERFPIAVEAPEACPRYLGRVVRGIDVAAKTPLWMSEKLRR CGIRSIDPVVDVTNYVLLELGQPMHAFDLNRLQGGIVVRMARDGETLTLLDGSQATLGSDTLVIADHQQALALGGIFGGE HSGVNAETRDVLLECAYFNPLAITGRARRYGLHTDASHRYERGVDPQLQQRAMERATELLLALCGGQAGPVMDVTNDAYL PQPANIVLQRSKLDRLIGHHIDDVQVLDILQRLGCQVTAVDGGWQAVAPSWRFDMAIEEDLIEEVARVYGYNNIPDVPLR ADLVMTAHREANLPLKRVKTLLVDRGYQEAITYSFVDPKVQALLHPQQQALILPNPISVDMSAMRLSLWTGLLGAVVYNQ NRQQSRVRLFESGLRFVPDEGANLGIRQDVMLAGVIAGHRDEEHWGIERQAVDFYDLKGDLEAVLELTGKLDAVQFRAEA HDALHPGQSAALYLHGERIGFIGVVHPELERKLDLNGRTVVFEVCWSALAERLIPQAREISRYPANRRDIAVVVAENVSA EDVLAECKKVGANQVVGVNLFDVYCGKGVAEGHKSLAISLVLQDTTRTLEEVEIAATVAKCVEALKQRFQASLRD
Sequences:
>Translated_795_residues MKFSELWLREWVNPAISSDALSEQITMAGLEVDGVEPVAGAFHGVVVGEVVECHQHPNADKLRVTKVSVGGERLLDIVCG APNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLCSFSELGICEDHSGIIELPQDAPIGCDLREYLQLNDNAIEI SVTPNRADCLGILGVARDVAVLNRLPLNMPQAAPVAASIDERFPIAVEAPEACPRYLGRVVRGIDVAAKTPLWMSEKLRR CGIRSIDPVVDVTNYVLLELGQPMHAFDLNRLQGGIVVRMARDGETLTLLDGSQATLGSDTLVIADHQQALALGGIFGGE HSGVNAETRDVLLECAYFNPLAITGRARRYGLHTDASHRYERGVDPQLQQRAMERATELLLALCGGQAGPVMDVTNDAYL PQPANIVLQRSKLDRLIGHHIDDVQVLDILQRLGCQVTAVDGGWQAVAPSWRFDMAIEEDLIEEVARVYGYNNIPDVPLR ADLVMTAHREANLPLKRVKTLLVDRGYQEAITYSFVDPKVQALLHPQQQALILPNPISVDMSAMRLSLWTGLLGAVVYNQ NRQQSRVRLFESGLRFVPDEGANLGIRQDVMLAGVIAGHRDEEHWGIERQAVDFYDLKGDLEAVLELTGKLDAVQFRAEA HDALHPGQSAALYLHGERIGFIGVVHPELERKLDLNGRTVVFEVCWSALAERLIPQAREISRYPANRRDIAVVVAENVSA EDVLAECKKVGANQVVGVNLFDVYCGKGVAEGHKSLAISLVLQDTTRTLEEVEIAATVAKCVEALKQRFQASLRD >Mature_795_residues MKFSELWLREWVNPAISSDALSEQITMAGLEVDGVEPVAGAFHGVVVGEVVECHQHPNADKLRVTKVSVGGERLLDIVCG APNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLCSFSELGICEDHSGIIELPQDAPIGCDLREYLQLNDNAIEI SVTPNRADCLGILGVARDVAVLNRLPLNMPQAAPVAASIDERFPIAVEAPEACPRYLGRVVRGIDVAAKTPLWMSEKLRR CGIRSIDPVVDVTNYVLLELGQPMHAFDLNRLQGGIVVRMARDGETLTLLDGSQATLGSDTLVIADHQQALALGGIFGGE HSGVNAETRDVLLECAYFNPLAITGRARRYGLHTDASHRYERGVDPQLQQRAMERATELLLALCGGQAGPVMDVTNDAYL PQPANIVLQRSKLDRLIGHHIDDVQVLDILQRLGCQVTAVDGGWQAVAPSWRFDMAIEEDLIEEVARVYGYNNIPDVPLR ADLVMTAHREANLPLKRVKTLLVDRGYQEAITYSFVDPKVQALLHPQQQALILPNPISVDMSAMRLSLWTGLLGAVVYNQ NRQQSRVRLFESGLRFVPDEGANLGIRQDVMLAGVIAGHRDEEHWGIERQAVDFYDLKGDLEAVLELTGKLDAVQFRAEA HDALHPGQSAALYLHGERIGFIGVVHPELERKLDLNGRTVVFEVCWSALAERLIPQAREISRYPANRRDIAVVVAENVSA EDVLAECKKVGANQVVGVNLFDVYCGKGVAEGHKSLAISLVLQDTTRTLEEVEIAATVAKCVEALKQRFQASLRD
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=795, Percent_Identity=80.7547169811321, Blast_Score=1298, Evalue=0.0,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 86942; Mature: 86942
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFSELWLREWVNPAISSDALSEQITMAGLEVDGVEPVAGAFHGVVVGEVVECHQHPNAD CCHHHHHHHHHCCHHHCHHHHHHHHEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCCCC KLRVTKVSVGGERLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLC CEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEE SFSELGICEDHSGIIELPQDAPIGCDLREYLQLNDNAIEISVTPNRADCLGILGVARDVA EHHHCCCCCCCCCCEECCCCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH VLNRLPLNMPQAAPVAASIDERFPIAVEAPEACPRYLGRVVRGIDVAAKTPLWMSEKLRR HHHHCCCCCCCCCCCHHCCCCCCCEEEECHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHH CGIRSIDPVVDVTNYVLLELGQPMHAFDLNRLQGGIVVRMARDGETLTLLDGSQATLGSD CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCC TLVIADHQQALALGGIFGGEHSGVNAETRDVLLECAYFNPLAITGRARRYGLHTDASHRY EEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHEEEECCCCEEEECCCCEECCCCCCCHHH ERGVDPQLQQRAMERATELLLALCGGQAGPVMDVTNDAYLPQPANIVLQRSKLDRLIGHH HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHEEEHHHHHHHHCCC IDDVQVLDILQRLGCQVTAVDGGWQAVAPSWRFDMAIEEDLIEEVARVYGYNNIPDVPLR CCCHHHHHHHHHHCCEEEEECCCCEECCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCC ADLVMTAHREANLPLKRVKTLLVDRGYQEAITYSFVDPKVQALLHPQQQALILPNPISVD EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHEEEECCHHHHHHHCCCCCEEECCCCCCCC MSAMRLSLWTGLLGAVVYNQNRQQSRVRLFESGLRFVPDEGANLGIRQDVMLAGVIAGHR HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC DEEHWGIERQAVDFYDLKGDLEAVLELTGKLDAVQFRAEAHDALHPGQSAALYLHGERIG CCHHCCCCHHCCEEEECCHHHHHHHHHHCCCHHEEEHHHHHHHCCCCCCEEEEEECCCEE FIGVVHPELERKLDLNGRTVVFEVCWSALAERLIPQAREISRYPANRRDIAVVVAENVSA EEEEECHHHHHHCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCH EDVLAECKKVGANQVVGVNLFDVYCGKGVAEGHKSLAISLVLQDTTRTLEEVEIAATVAK HHHHHHHHHCCCCCEEEEEEEEHHCCCCHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHH CVEALKQRFQASLRD HHHHHHHHHHHHCCC >Mature Secondary Structure MKFSELWLREWVNPAISSDALSEQITMAGLEVDGVEPVAGAFHGVVVGEVVECHQHPNAD CCHHHHHHHHHCCHHHCHHHHHHHHEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCCCC KLRVTKVSVGGERLLDIVCGAPNCRQGLRVAVATIGAVLPGDFKIKAAKLRGEPSEGMLC CEEEEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEE SFSELGICEDHSGIIELPQDAPIGCDLREYLQLNDNAIEISVTPNRADCLGILGVARDVA EHHHCCCCCCCCCCEECCCCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH VLNRLPLNMPQAAPVAASIDERFPIAVEAPEACPRYLGRVVRGIDVAAKTPLWMSEKLRR HHHHCCCCCCCCCCCHHCCCCCCCEEEECHHHHHHHHHHHHHCCCHHCCCCCHHHHHHHH CGIRSIDPVVDVTNYVLLELGQPMHAFDLNRLQGGIVVRMARDGETLTLLDGSQATLGSD CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCCCC TLVIADHQQALALGGIFGGEHSGVNAETRDVLLECAYFNPLAITGRARRYGLHTDASHRY EEEEECCCHHHHCCCCCCCCCCCCCCHHHHHHEEEECCCCEEEECCCCEECCCCCCCHHH ERGVDPQLQQRAMERATELLLALCGGQAGPVMDVTNDAYLPQPANIVLQRSKLDRLIGHH HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHEEEHHHHHHHHCCC IDDVQVLDILQRLGCQVTAVDGGWQAVAPSWRFDMAIEEDLIEEVARVYGYNNIPDVPLR CCCHHHHHHHHHHCCEEEEECCCCEECCCCCEECCHHHHHHHHHHHHHCCCCCCCCCCCC ADLVMTAHREANLPLKRVKTLLVDRGYQEAITYSFVDPKVQALLHPQQQALILPNPISVD EEEEEEECCCCCCCHHHHHHHHHCCCHHHHHEEEECCHHHHHHHCCCCCEEECCCCCCCC MSAMRLSLWTGLLGAVVYNQNRQQSRVRLFESGLRFVPDEGANLGIRQDVMLAGVIAGHR HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCC DEEHWGIERQAVDFYDLKGDLEAVLELTGKLDAVQFRAEAHDALHPGQSAALYLHGERIG CCHHCCCCHHCCEEEECCHHHHHHHHHHCCCHHEEEHHHHHHHCCCCCCEEEEEECCCEE FIGVVHPELERKLDLNGRTVVFEVCWSALAERLIPQAREISRYPANRRDIAVVVAENVSA EEEEECHHHHHHCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCH EDVLAECKKVGANQVVGVNLFDVYCGKGVAEGHKSLAISLVLQDTTRTLEEVEIAATVAK HHHHHHHHHCCCCCEEEEEEEEHHCCCCHHCCCCEEEEEEEEECHHHHHHHHHHHHHHHH CVEALKQRFQASLRD HHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11586360; 12142430 [H]