| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919765
Identifier: 238919765
GI number: 238919765
Start: 1802328
End: 1802525
Strand: Direct
Name: 238919765
Synonym: NT01EI_1869
Alternate gene names: NA
Gene position: 1802328-1802525 (Clockwise)
Preceding gene: 238919764
Following gene: 238919766
Centisome position: 47.28
GC content: 48.48
Gene sequence:
>198_bases ATGCTTTCCTTTTTTACCAACATCCCTCCATGTTTGAGCAGCATGGAAGCCTGTGCTTCTGCTCACTTCTGGGTCGGTAA GCTTATGTCGATGGGCCATAACATCAAACTGATGGCCCCTCAGTTCGTCAAGCCCTATGTCAAAACCAATAAGCATGATG CTGCAGACGCAGAGGCTATTTGCGAAGCCGTTACGTGA
Upstream 100 bases:
>100_bases TAAAACTATCGGTATCGATTTGGCAAAAGAGGTTTTCCAGGTTCATTGAATTGACGAACACGGCCAGCGATTGCCCAACA GGCAGCTCAAACGCACAAAA
Downstream 100 bases:
>100_bases CCCAACATGCGATGCATGCCTGTCAAGCTCCCTGAGCGACAAACCGTACTGGCACTTCACCGAAGTCGTCAGCGTTTCAT CAAGCAATAGAGTGCTCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 65; Mature: 65
Protein sequence:
>65_residues MLSFFTNIPPCLSSMEACASAHFWVGKLMSMGHNIKLMAPQFVKPYVKTNKHDAADAEAICEAVT
Sequences:
>Translated_65_residues MLSFFTNIPPCLSSMEACASAHFWVGKLMSMGHNIKLMAPQFVKPYVKTNKHDAADAEAICEAVT >Mature_65_residues MLSFFTNIPPCLSSMEACASAHFWVGKLMSMGHNIKLMAPQFVKPYVKTNKHDAADAEAICEAVT
Specific function: Required for the transposition of an insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 7131; Mature: 7131
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.6 %Cys (Translated Protein) 7.7 %Met (Translated Protein) 12.3 %Cys+Met (Translated Protein) 4.6 %Cys (Mature Protein) 7.7 %Met (Mature Protein) 12.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSFFTNIPPCLSSMEACASAHFWVGKLMSMGHNIKLMAPQFVKPYVKTNKHDAADAEAI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCHHHH CEAVT HHHCC >Mature Secondary Structure MLSFFTNIPPCLSSMEACASAHFWVGKLMSMGHNIKLMAPQFVKPYVKTNKHDAADAEAI CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCHHHH CEAVT HHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]