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The map label for this gene is ycfS [H]

Identifier: 238919740

GI number: 238919740

Start: 1780971

End: 1781993

Strand: Direct

Name: ycfS [H]

Synonym: NT01EI_1844

Alternate gene names: 238919740

Gene position: 1780971-1781993 (Clockwise)

Preceding gene: 238919738

Following gene: 238919743

Centisome position: 46.72

GC content: 61.09

Gene sequence:

>1023_bases
ATGAAATGTACACTGACTGCAGTAAGCTTTATGCTGTCGCTATGGATGGCGGCAGGGAGCGGCGCCCACGCGGCGGACTA
TCCATTGCCGACGTCTGACAGCCGCCTCATTGGCGAAAATTTTACTTACACCGTTCCCCGCGATGGCAAACCACTGGAGG
CGACGGCTGCGCGATTTCAGATTGGGCTGCTGGGGATGCTGGAGGCCAATCCCGGCGTAGATCCCTTCTTGCCCCGGCCG
GGCAGCGAGCTGATCATCCCAGCCCAGATGCTTCTGCCGGACGCGCCGCGTGAAGGGATCGTTATCAACCTTGCCGAGTT
GCGTCTGTTCTACTACCCGCCGGGAGAGAATCGGGTTGAGGTCTATCCGATCGGCATCGGCCAGCTGGGACGCGATACGC
CGGAGATGGTGACGCGGATCTCTCAGCATATTAAGGATCCAACCTGGACGCCGACCGCCAATATCCGCCGCGACTATCAG
GCTCAGGGGATCAGCCTGCCTGCGGTGATGCCCGCCGGACCGGATAACCCGATGGGGCGCTTTGCGCTGCGTCTGGCCGC
CCAGGGCGGGGTCTATCTTATCCACGGTACCAATGCCGACTTTGGCATCGGCATGCGGGTCAGCTCCGGCTGTATCCGCT
TGCGTCCTGATGATATTGAAGCACTGTTTCGCAGCGTACCTGGAGGAACCCGGGTACAGATTGTCAATCAGCCGCTGAAG
GTGTCGGTAGAGCCGGACGGTAAACGCTATGTTGAGGTGCACCAGCCGCTGTCGCGCTCTGAGCGTGACGATCCGCAGGT
GCTACCGATCGTGTTGAATGGACGTCTGTCCACCTTCGCAGCCAGCCCGCTGACGGAGCGCGCAGCGTTTGATGGAGCGA
TGGCGCGACGTTCAGGTATGCCGGTACTGGTAAGCCATGCTGCGCCGCTCAGCAACGAGGCATCCACTAATGTTCTGGCG
TCCGCTAGCGCTCCGGCGCCGATCGATGCTGCTATCCCCGAGGCAGTATTGGACGGCCGCTAA

Upstream 100 bases:

>100_bases
CAGTAAATATTAATATTTGTGTCGATTGCCTGCGGCTGTCGCCCAAGACGGTATCCGACGCGGCGGCGTCGGTAGATACA
GAACAGATCGGGAACCCAGC

Downstream 100 bases:

>100_bases
GGAGCCAGGGGCCCGGTGTATCGAATAGGAAGTGCAACCCCCCTTTTTGCGTATCGCAGCGTGACACAGGGCGTGCGGGC
GTTGAATGGAGGAGGCGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MKCTLTAVSFMLSLWMAAGSGAHAADYPLPTSDSRLIGENFTYTVPRDGKPLEATAARFQIGLLGMLEANPGVDPFLPRP
GSELIIPAQMLLPDAPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRDTPEMVTRISQHIKDPTWTPTANIRRDYQ
AQGISLPAVMPAGPDNPMGRFALRLAAQGGVYLIHGTNADFGIGMRVSSGCIRLRPDDIEALFRSVPGGTRVQIVNQPLK
VSVEPDGKRYVEVHQPLSRSERDDPQVLPIVLNGRLSTFAASPLTERAAFDGAMARRSGMPVLVSHAAPLSNEASTNVLA
SASAPAPIDAAIPEAVLDGR

Sequences:

>Translated_340_residues
MKCTLTAVSFMLSLWMAAGSGAHAADYPLPTSDSRLIGENFTYTVPRDGKPLEATAARFQIGLLGMLEANPGVDPFLPRP
GSELIIPAQMLLPDAPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRDTPEMVTRISQHIKDPTWTPTANIRRDYQ
AQGISLPAVMPAGPDNPMGRFALRLAAQGGVYLIHGTNADFGIGMRVSSGCIRLRPDDIEALFRSVPGGTRVQIVNQPLK
VSVEPDGKRYVEVHQPLSRSERDDPQVLPIVLNGRLSTFAASPLTERAAFDGAMARRSGMPVLVSHAAPLSNEASTNVLA
SASAPAPIDAAIPEAVLDGR
>Mature_340_residues
MKCTLTAVSFMLSLWMAAGSGAHAADYPLPTSDSRLIGENFTYTVPRDGKPLEATAARFQIGLLGMLEANPGVDPFLPRP
GSELIIPAQMLLPDAPREGIVINLAELRLFYYPPGENRVEVYPIGIGQLGRDTPEMVTRISQHIKDPTWTPTANIRRDYQ
AQGISLPAVMPAGPDNPMGRFALRLAAQGGVYLIHGTNADFGIGMRVSSGCIRLRPDDIEALFRSVPGGTRVQIVNQPLK
VSVEPDGKRYVEVHQPLSRSERDDPQVLPIVLNGRLSTFAASPLTERAAFDGAMARRSGMPVLVSHAAPLSNEASTNVLA
SASAPAPIDAAIPEAVLDGR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787356, Length=280, Percent_Identity=64.2857142857143, Blast_Score=363, Evalue=1e-102,
Organism=Escherichia coli, GI1787968, Length=293, Percent_Identity=54.2662116040956, Blast_Score=317, Evalue=5e-88,
Organism=Escherichia coli, GI1787040, Length=303, Percent_Identity=52.4752475247525, Blast_Score=311, Evalue=5e-86,
Organism=Escherichia coli, GI1788299, Length=312, Percent_Identity=51.6025641025641, Blast_Score=308, Evalue=3e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 36475; Mature: 36475

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCTLTAVSFMLSLWMAAGSGAHAADYPLPTSDSRLIGENFTYTVPRDGKPLEATAARFQ
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCHHHHHHEE
IGLLGMLEANPGVDPFLPRPGSELIIPAQMLLPDAPREGIVINLAELRLFYYPPGENRVE
EEEEEEEECCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCCCEEE
VYPIGIGQLGRDTPEMVTRISQHIKDPTWTPTANIRRDYQAQGISLPAVMPAGPDNPMGR
EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCHHHCCCCCCEECCCCCCCCHHH
FALRLAAQGGVYLIHGTNADFGIGMRVSSGCIRLRPDDIEALFRSVPGGTRVQIVNQPLK
EEEEEECCCCEEEEECCCCCCEEEEEECCCEEEECCHHHHHHHHHCCCCCEEEEECCCEE
VSVEPDGKRYVEVHQPLSRSERDDPQVLPIVLNGRLSTFAASPLTERAAFDGAMARRSGM
EEECCCCCEEEEECCCHHCCCCCCCCEEEEEECCCEEEHCCCCCHHHHHHHHHHHHHCCC
PVLVSHAAPLSNEASTNVLASASAPAPIDAAIPEAVLDGR
CEEEECCCCCCCCCCCCEEEECCCCCCCCHHCCHHHHCCC
>Mature Secondary Structure
MKCTLTAVSFMLSLWMAAGSGAHAADYPLPTSDSRLIGENFTYTVPRDGKPLEATAARFQ
CEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCHHHHHHEE
IGLLGMLEANPGVDPFLPRPGSELIIPAQMLLPDAPREGIVINLAELRLFYYPPGENRVE
EEEEEEEECCCCCCCCCCCCCCCEEEEHHHHCCCCCCCCEEEEEEEEEEEEECCCCCEEE
VYPIGIGQLGRDTPEMVTRISQHIKDPTWTPTANIRRDYQAQGISLPAVMPAGPDNPMGR
EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCCCHHHCCCCCCEECCCCCCCCHHH
FALRLAAQGGVYLIHGTNADFGIGMRVSSGCIRLRPDDIEALFRSVPGGTRVQIVNQPLK
EEEEEECCCCEEEEECCCCCCEEEEEECCCEEEECCHHHHHHHHHCCCCCEEEEECCCEE
VSVEPDGKRYVEVHQPLSRSERDDPQVLPIVLNGRLSTFAASPLTERAAFDGAMARRSGM
EEECCCCCEEEEECCCHHCCCCCCCCEEEEEECCCEEEHCCCCCHHHHHHHHHHHHHCCC
PVLVSHAAPLSNEASTNVLASASAPAPIDAAIPEAVLDGR
CEEEECCCCCCCCCCCCEEEECCCCCCCCHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]