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The map label for this gene is ycfM [H]

Identifier: 238919706

GI number: 238919706

Start: 1747338

End: 1747934

Strand: Direct

Name: ycfM [H]

Synonym: NT01EI_1809

Alternate gene names: 238919706

Gene position: 1747338-1747934 (Clockwise)

Preceding gene: 238919705

Following gene: 238919707

Centisome position: 45.83

GC content: 64.82

Gene sequence:

>597_bases
ATGATGATGAAGAGAATGACGGGGATCGCGCTGGCCGCGCTGCTGCTAAGCGGCTGTCAGGGGCTGTTGCAGCGCGGTGA
GAGACCCTCTCAGCCGCCGGCGCCAACGACATCGGCAAAGCCCAGCGTGGTGCCGACACCGCGGCCGCCGGTCGTCACCC
CGGTACCGCAGCCGCCCAAGATGAGCAGCCTGGACTGGCAGGGTAGCTTTGCGCCGCTGATCGATCAGCTGTTGAGCGCT
CAGGGGGGCGAGACCGGCAGTATTCTGCTGGTGGATGGGGTGCAAAATAAAACCAACGGTCAGCTGGGGATGGCCAACGC
CAGCGAGGTGCTGCGCAGCGCGCTGGCCGGTAACCCCCGTTTTCAGCTGGTGTCGGCGGCGCAGTTGGCACAGGCCAAAC
AGAGTCTGGGGCTGGCGGCCAATGACAGCCTCGGATCGCGCAGTAAGGCGATCGGTTTGGCGCGGCAGGTGAGTGCCCAG
TATGTGCTGTATACCACCGTCAGCGGCAATGTGCAGGCGCCGCGTCTGGCGATGCAGCTGATGCTGGTGCAGAGCGGGGA
GATCATCTGGTCGGGTAAAGGCTCGGTTGCGCTCTGA

Upstream 100 bases:

>100_bases
CAGAGTGGAGAACGGGTCAGACTGACGTCGTTCAGCCGGGATCCGCAGGCGCGTCAGGTGCGGCTATATCTTTATTACTG
ATGGGTAAACAGGATTGATC

Downstream 100 bases:

>100_bases
TCCGTCGGCCGTACAGGCGCAGCTGCGGGCGGTGCTGTGCCGCCGATTTCCCTCGCTGCCGGGCGCCGGCTGGCAGTTTA
GCCTGACGCAGGGGCTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MMMKRMTGIALAALLLSGCQGLLQRGERPSQPPAPTTSAKPSVVPTPRPPVVTPVPQPPKMSSLDWQGSFAPLIDQLLSA
QGGETGSILLVDGVQNKTNGQLGMANASEVLRSALAGNPRFQLVSAAQLAQAKQSLGLAANDSLGSRSKAIGLARQVSAQ
YVLYTTVSGNVQAPRLAMQLMLVQSGEIIWSGKGSVAL

Sequences:

>Translated_198_residues
MMMKRMTGIALAALLLSGCQGLLQRGERPSQPPAPTTSAKPSVVPTPRPPVVTPVPQPPKMSSLDWQGSFAPLIDQLLSA
QGGETGSILLVDGVQNKTNGQLGMANASEVLRSALAGNPRFQLVSAAQLAQAKQSLGLAANDSLGSRSKAIGLARQVSAQ
YVLYTTVSGNVQAPRLAMQLMLVQSGEIIWSGKGSVAL
>Mature_198_residues
MMMKRMTGIALAALLLSGCQGLLQRGERPSQPPAPTTSAKPSVVPTPRPPVVTPVPQPPKMSSLDWQGSFAPLIDQLLSA
QGGETGSILLVDGVQNKTNGQLGMANASEVLRSALAGNPRFQLVSAAQLAQAKQSLGLAANDSLGSRSKAIGLARQVSAQ
YVLYTTVSGNVQAPRLAMQLMLVQSGEIIWSGKGSVAL

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=211, Percent_Identity=50.2369668246445, Blast_Score=186, Evalue=9e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014094 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20554; Mature: 20554

Theoretical pI: Translated: 10.93; Mature: 10.93

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMMKRMTGIALAALLLSGCQGLLQRGERPSQPPAPTTSAKPSVVPTPRPPVVTPVPQPPK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
MSSLDWQGSFAPLIDQLLSAQGGETGSILLVDGVQNKTNGQLGMANASEVLRSALAGNPR
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHCCCCC
FQLVSAAQLAQAKQSLGLAANDSLGSRSKAIGLARQVSAQYVLYTTVSGNVQAPRLAMQL
EEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
MLVQSGEIIWSGKGSVAL
HHHHCCCEEECCCCCCCC
>Mature Secondary Structure
MMMKRMTGIALAALLLSGCQGLLQRGERPSQPPAPTTSAKPSVVPTPRPPVVTPVPQPPK
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
MSSLDWQGSFAPLIDQLLSAQGGETGSILLVDGVQNKTNGQLGMANASEVLRSALAGNPR
CCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHCCCCC
FQLVSAAQLAQAKQSLGLAANDSLGSRSKAIGLARQVSAQYVLYTTVSGNVQAPRLAMQL
EEHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
MLVQSGEIIWSGKGSVAL
HHHHCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]