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The map label for this gene is kduI

Identifier: 238919698

GI number: 238919698

Start: 1742686

End: 1743522

Strand: Reverse

Name: kduI

Synonym: NT01EI_1801

Alternate gene names: 238919698

Gene position: 1743522-1742686 (Counterclockwise)

Preceding gene: 238919701

Following gene: 238919697

Centisome position: 45.73

GC content: 58.54

Gene sequence:

>837_bases
ATGGAAGTCCGTCAAAGCATCCACAGCGATCACGCGAAGCAGCTCGACACCGCCGGTCTGCGTCGTGAGTTTCTCATCGA
TACCGTCTTCGACGCCGATCGCTATACCATGGTCTACAGCCATATCGATCGCATAATCGTCGGTGGCATCATGCCCGTGA
CGCAGAGTGTCTCTATCGGCAACGAGGTGGGAAAGCAGCTGGGCGTCGGCTATTTTCTTGAGCGCCGCGAGCTGGGCGTT
ATCAATATCGGCGGCCCCGGCACCATTGACGTCGACGGTAAGTGCTATGAAATCGGCCCGCGTGAGGCGCTGTATGTCGG
CCAGGGCGCCCGCGACCTGCGTTTCGCCAGCCTGGATAGCGCCTGCCCGGCCAAGTTCTACTACAACTGCGCGCCGGCCC
ATACCCACTACCCAAACCGCAAGATCACTCCGGCTGAAGTCTCTCCGCAGACCTTGGGCGATACCAAGAGCAGCAACCGC
CGTACCATCAATAAATACATGGTGCCGGAGGTGCTGCCGACCTGTCAGCTGTCGATGGGTCTGACGGAGCTTGAAGAGGG
CAACCTGTGGAATACCATGCCGTGCCACACCCATGAGCGCCGCATGGAGGTTTACTTCTATTTCAATATGGCGCCGGACA
GCTGCGTATTCCACATGATGGGAGAACCGCAGGAGACGCGGCATATCGTGATGCGCAACGAACAGGCCGTGATCTCCCCC
AGCTGGTCTATCCATTCGGGCGTCGGCACCCGGGCCTACACCTTTATCTGGGGCATGGTGGGGGAAAACCAGGTTTTTGA
CGATATGGACCACCTCGCCATTACCGATTTGCGCTAA

Upstream 100 bases:

>100_bases
AGCCCTGCAAGGATTGAGTTAGGATCCTCATCAGCACACGGGATCGGCCCAATGCCTGAGCCTGAGCCCGTCGGGTGTTA
CTGAGCATAACGAGGTAAAA

Downstream 100 bases:

>100_bases
CCGTTATTTTTCATTCATCCGCACGTCGGCGGGGATGCCGGCGCGCCAATTAAAGGATAAAAGGCATGATTCTGGATACA
TTCTCTCTGCAGGGTAAAGT

Product: 5-keto-4-deoxyuronate isomerase

Products: NA

Alternate protein names: 5-keto-4-deoxyuronate isomerase; DKI isomerase

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MEVRQSIHSDHAKQLDTAGLRREFLIDTVFDADRYTMVYSHIDRIIVGGIMPVTQSVSIGNEVGKQLGVGYFLERRELGV
INIGGPGTIDVDGKCYEIGPREALYVGQGARDLRFASLDSACPAKFYYNCAPAHTHYPNRKITPAEVSPQTLGDTKSSNR
RTINKYMVPEVLPTCQLSMGLTELEEGNLWNTMPCHTHERRMEVYFYFNMAPDSCVFHMMGEPQETRHIVMRNEQAVISP
SWSIHSGVGTRAYTFIWGMVGENQVFDDMDHLAITDLR

Sequences:

>Translated_278_residues
MEVRQSIHSDHAKQLDTAGLRREFLIDTVFDADRYTMVYSHIDRIIVGGIMPVTQSVSIGNEVGKQLGVGYFLERRELGV
INIGGPGTIDVDGKCYEIGPREALYVGQGARDLRFASLDSACPAKFYYNCAPAHTHYPNRKITPAEVSPQTLGDTKSSNR
RTINKYMVPEVLPTCQLSMGLTELEEGNLWNTMPCHTHERRMEVYFYFNMAPDSCVFHMMGEPQETRHIVMRNEQAVISP
SWSIHSGVGTRAYTFIWGMVGENQVFDDMDHLAITDLR
>Mature_278_residues
MEVRQSIHSDHAKQLDTAGLRREFLIDTVFDADRYTMVYSHIDRIIVGGIMPVTQSVSIGNEVGKQLGVGYFLERRELGV
INIGGPGTIDVDGKCYEIGPREALYVGQGARDLRFASLDSACPAKFYYNCAPAHTHYPNRKITPAEVSPQTLGDTKSSNR
RTINKYMVPEVLPTCQLSMGLTELEEGNLWNTMPCHTHERRMEVYFYFNMAPDSCVFHMMGEPQETRHIVMRNEQAVISP
SWSIHSGVGTRAYTFIWGMVGENQVFDDMDHLAITDLR

Specific function: Pectin degradation. [C]

COG id: COG3717

COG function: function code G; 5-keto 4-deoxyuronate isomerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kduI family

Homologues:

Organism=Escherichia coli, GI1789209, Length=278, Percent_Identity=80.9352517985612, Blast_Score=487, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDUI_EDWI9 (C5BFL5)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002933213.1
- GeneID:   7962122
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_1801
- OMA:   MPAHTHD
- ProtClustDB:   PRK00924
- HAMAP:   MF_00687
- InterPro:   IPR011051
- InterPro:   IPR007045
- InterPro:   IPR021120
- PIRSF:   PIRSF006625

Pfam domain/function: PF04962 KduI; SSF51182 RmlC_like_cupin

EC number: =5.3.1.17

Molecular weight: Translated: 31400; Mature: 31400

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVRQSIHSDHAKQLDTAGLRREFLIDTVFDADRYTMVYSHIDRIIVGGIMPVTQSVSIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHH
NEVGKQLGVGYFLERRELGVINIGGPGTIDVDGKCYEIGPREALYVGQGARDLRFASLDS
HHHHHHHCCCEEEECCCCCEEECCCCCEEECCCEEEEECCCCEEEECCCCCCEEEECCCC
ACPAKFYYNCAPAHTHYPNRKITPAEVSPQTLGDTKSSNRRTINKYMVPEVLPTCQLSMG
CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEHHHHHCHHHCCCHHHHCC
LTELEEGNLWNTMPCHTHERRMEVYFYFNMAPDSCVFHMMGEPQETRHIVMRNEQAVISP
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCHHCEEEEECCEEEECC
SWSIHSGVGTRAYTFIWGMVGENQVFDDMDHLAITDLR
CCCCCCCCCCEEEEEEEEECCCCCHHHCCCCEEEECCC
>Mature Secondary Structure
MEVRQSIHSDHAKQLDTAGLRREFLIDTVFDADRYTMVYSHIDRIIVGGIMPVTQSVSIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHH
NEVGKQLGVGYFLERRELGVINIGGPGTIDVDGKCYEIGPREALYVGQGARDLRFASLDS
HHHHHHHCCCEEEECCCCCEEECCCCCEEECCCEEEEECCCCEEEECCCCCCEEEECCCC
ACPAKFYYNCAPAHTHYPNRKITPAEVSPQTLGDTKSSNRRTINKYMVPEVLPTCQLSMG
CCCCCEEEECCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEHHHHHCHHHCCCHHHHCC
LTELEEGNLWNTMPCHTHERRMEVYFYFNMAPDSCVFHMMGEPQETRHIVMRNEQAVISP
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEECCCCCHHCEEEEECCEEEECC
SWSIHSGVGTRAYTFIWGMVGENQVFDDMDHLAITDLR
CCCCCCCCCCEEEEEEEEECCCCCHHHCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA