| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919666
Identifier: 238919666
GI number: 238919666
Start: 1715139
End: 1716014
Strand: Direct
Name: 238919666
Synonym: NT01EI_1767
Alternate gene names: NA
Gene position: 1715139-1716014 (Clockwise)
Preceding gene: 238919665
Following gene: 238919668
Centisome position: 44.99
GC content: 49.89
Gene sequence:
>876_bases TTGGGATCGAAGCGTCCGTCCACCGGGGCATTTTACTGGCAGCGTGAGTTTGAGAAACTGGGGCACAAAGTAAAGGTCAT CAGTCCTCAGTATGTAAAACCCTTTGTCCGCGGGCAAAAAAATGATGGTAATGATGCACAGGCCATCGCAGTGGCTCTGA TGCAACCGACAATGCAGTTCGTGCCGCCAAAAAGCCCCGAACAGCAGGATATCCAGGCTTTACACCGGGCAAGGCAGCGT ATTGTCAATCACCGCACTACTACAGTCTGTCAAATAAGAGGGCTGTTACTTGACCGGGGGATCCCCATTGGCAGTGCTGT CTCCAGAGCTCGCCGGGCTATTCCTCTTATCCTTGAAGATGCAGAAAACGGTCTACGTTCCCGTATGCGCAGAACAATTG CCGAGCTCTATGATCTCTTTAACGATCTCGAGCGTCGGATCCATTTTTTTGATAAGGAAATTGAAACAGTATTCAGGCAA TCAGAAGCCTGTCAGCGTATCGCCAGAGTTAAAGGCATTGGCCCTAAAACGGCCACGGCCGTTGTTGCTGCTATTGGCAA AGGAACTGAATTTAAGAATGGCCGCCACTTTGCTGCATGGCTGGGTCTGGTTCCACGCCAGCATTCGAGTGGCGACAGGC AGGTGCTGATGAATATGACGAAAAAAGGCGACAAGCATCTGCGGACTCTTTTTATTCATGGTGCCCGCGCTGTCGTCAGG GTTGCCACGAATAACAATGATGGTCATATGAATCAGTGGGTTAATCAGTTAAAGGAACGGTGCGGATTTAATAAAACGAC CGTGGCGGTCGCTAACAAAAACGCGCGAATAATCTGGTCGATGCTGAGAAATGAGACCGAGTATCAGGTAGTGTGA
Upstream 100 bases:
>100_bases CAACTCTGCGGGTTAAACCAGGCCGGCAAACCGGTTTATACGAAACGAACTGGCCGAAAAGAATTGCTCCAGACGCTGGC AAATATTCCTGCATGTCTGA
Downstream 100 bases:
>100_bases AATTAATCCCCTGCCAGAAAAAGTTGCAGCGTACTGAGAAATGGTGACAGGTTGCACCTGCACAATCGGAACCTGATTTT TATACTGGCCTCAGAGGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQR IVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQ SEACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV
Sequences:
>Translated_291_residues MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQR IVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQ SEACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV >Mature_290_residues GSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQFVPPKSPEQQDIQALHRARQRI VNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILEDAENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQS EACQRIARVKGIGPKTATAVVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVRV ATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV
Specific function: Required for the transposition of an insertion element (Potential) [H]
COG id: COG3547
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 20 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003583 - InterPro: IPR003346 - InterPro: IPR002525 [H]
Pfam domain/function: PF02371 Transposase_20; PF01548 Transposase_9 [H]
EC number: NA
Molecular weight: Translated: 33074; Mature: 32942
Theoretical pI: Translated: 11.28; Mature: 11.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQF CCCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VPPKSPEQQDIQALHRARQRIVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILED CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH AENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIGPKTATA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEE VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCC >Mature Secondary Structure GSKRPSTGAFYWQREFEKLGHKVKVISPQYVKPFVRGQKNDGNDAQAIAVALMQPTMQF CCCCCCCCHHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH VPPKSPEQQDIQALHRARQRIVNHRTTTVCQIRGLLLDRGIPIGSAVSRARRAIPLILED CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCHHHHHH AENGLRSRMRRTIAELYDLFNDLERRIHFFDKEIETVFRQSEACQRIARVKGIGPKTATA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH VVAAIGKGTEFKNGRHFAAWLGLVPRQHSSGDRQVLMNMTKKGDKHLRTLFIHGARAVVR HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCHHHHHHHHEECCCEEEE VATNNNDGHMNQWVNQLKERCGFNKTTVAVANKNARIIWSMLRNETEYQVV EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]