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The map label for this gene is yoaB [H]

Identifier: 238919518

GI number: 238919518

Start: 1575648

End: 1575992

Strand: Reverse

Name: yoaB [H]

Synonym: NT01EI_1614

Alternate gene names: 238919518

Gene position: 1575992-1575648 (Counterclockwise)

Preceding gene: 238919521

Following gene: 238919510

Centisome position: 41.34

GC content: 59.71

Gene sequence:

>345_bases
ATGTCTATCGAACGTATCAATCCGGAGCAGCGCTGGTCTGATGCCACCGTCTTCAACAACACCATCTACTTTACCAGTGT
GCCGGAAAACCTGGATGCCGACGCAACGGCGCAGACTGCCAACGCGCTGGCTGCCATCGACATGTTGCTCAGCCAGCTGG
GCAGCGATAAGACCCGGATTCTTGATGCCACCATTTTCCTGGCAGACAGTGCGGACTTTGCAGCCATGAACGCCGCCTGG
GACGCCTGGGTCGCCCCCGGTAAAGCGCCGGTGCGCTGTACCGTGCAGGCCAAGCTGATGCACCCGCAGTATCGGGTAGA
GATCAAAATCGTCGCCGCCCGCTGA

Upstream 100 bases:

>100_bases
CGCGCAGATAGCGCGCGACGTGGGGGCGCGGAGGATACAGCCGCGCCGCTTTTGAGTATACTGACGCCGCAGACACCACC
ACTTATTAAGGGCGAGATTT

Downstream 100 bases:

>100_bases
ACAAACGGCCCGCAAGTGGGCCGTTCTCCAAAATTCAGGCCAGCTTAATCACCGCCATACCGGCCAGCAGCAGCAGCAGC
CCGCACCACCCCTTGCAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSIERINPEQRWSDATVFNNTIYFTSVPENLDADATAQTANALAAIDMLLSQLGSDKTRILDATIFLADSADFAAMNAAW
DAWVAPGKAPVRCTVQAKLMHPQYRVEIKIVAAR

Sequences:

>Translated_114_residues
MSIERINPEQRWSDATVFNNTIYFTSVPENLDADATAQTANALAAIDMLLSQLGSDKTRILDATIFLADSADFAAMNAAW
DAWVAPGKAPVRCTVQAKLMHPQYRVEIKIVAAR
>Mature_113_residues
SIERINPEQRWSDATVFNNTIYFTSVPENLDADATAQTANALAAIDMLLSQLGSDKTRILDATIFLADSADFAAMNAAWD
AWVAPGKAPVRCTVQAKLMHPQYRVEIKIVAAR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=69.9115044247788, Blast_Score=166, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12512; Mature: 12381

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIERINPEQRWSDATVFNNTIYFTSVPENLDADATAQTANALAAIDMLLSQLGSDKTRI
CCCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
LDATIFLADSADFAAMNAAWDAWVAPGKAPVRCTVQAKLMHPQYRVEIKIVAAR
EEEEEEEECCCCCEEECCCCHHEECCCCCCEEEEEEEEECCCEEEEEEEEEEEC
>Mature Secondary Structure 
SIERINPEQRWSDATVFNNTIYFTSVPENLDADATAQTANALAAIDMLLSQLGSDKTRI
CCCCCCCCCCCCCCEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEE
LDATIFLADSADFAAMNAAWDAWVAPGKAPVRCTVQAKLMHPQYRVEIKIVAAR
EEEEEEEECCCCCEEECCCCHHEECCCCCCEEEEEEEEECCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]