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The map label for this gene is sirB1 [H]

Identifier: 238919472

GI number: 238919472

Start: 1527594

End: 1528403

Strand: Direct

Name: sirB1 [H]

Synonym: NT01EI_1566

Alternate gene names: 238919472

Gene position: 1527594-1528403 (Clockwise)

Preceding gene: 238919471

Following gene: 238919473

Centisome position: 40.07

GC content: 63.46

Gene sequence:

>810_bases
ATGAGTGTAATAGCCGATTTTGCCTTTGATGAGGCGTTGCTGAGCGACGGCGTGCTGCAGATGCAGCATGCCGTCCGCCC
GGAACTGGACCCGGCGCGCCTGCGCGCCGAGCTGGATGGTTTGGCCGCGCAGGCGCAAACGGCGCTGCAGGGGGTATGCG
GCGAGCAGGCGCGCCTGCAGCGTCTGCTGGCGTTGTTTTTTGACGAGTGGGGATTCGGCGGGGTCAGCGGTGTCTACCGG
CTTTCCGATGCGCTGTGGCTGGACACCGTTCTGGCGCGACGTCAGGGAACGCCGGCCTCGCTGGGGATTATTCTGCAGCA
TATTGCCCAGGCGCTTGCGCTGCCGCTGCAGGCGGTGGTGTTCCCGACGCAGCTGCTGCTGCGCGCCGACTGGCCACAGG
GTGGCTACCGGCTGTTCAATCCCCTGAACGGCGAGACGTTGGAGAGTACCCTGCTGGCGGTATGGCTTAAAGGGCATCAG
GGCATGCAGGCCCACATGAGCAGTGGAGATATTGAGGCGGCGGAAAACAGCCAGGTGGTGCGCCGTCTGCTGACGACGCT
GAAGGCGGCGCTGATGGAGGAGCAGCAGGTTGAGCTGGCGCTCAACGCCTGCGAGGCGCTGCTGTGCTTTGAGCCGGAAG
ATCCCTATGAGATCCGCGATCGCGGGCTGCTCTATGTCCGTCTGGAGTGTCCGCATATCGCGCTGTCCGATCTGAGCTAC
TTCATCGAGCAGTGCCCGGAGGATCCGGTGGCTGATGTGATTCGGCTTCAGATCCACGCCATCGAGCAGTTTGAGGTGGT
GCTGCATTAG

Upstream 100 bases:

>100_bases
ACCTTAGGACAGTACTGTCCGTCGTGCTGAGGCGGCGGGATAGGCCGGATATGATGATGAAACAGACGATCAACGGGCTG
CCGCTGATGATGGAATGGGT

Downstream 100 bases:

>100_bases
CGACGGCAGCCCCCTTCGGGACAACGGCGCCGCGCTGCATCATGGCCCGGGTTTTCTTTTGACTGCGCAGGAGCGGCGAC
AGACGGTGGAGTATGGCATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MSVIADFAFDEALLSDGVLQMQHAVRPELDPARLRAELDGLAAQAQTALQGVCGEQARLQRLLALFFDEWGFGGVSGVYR
LSDALWLDTVLARRQGTPASLGIILQHIAQALALPLQAVVFPTQLLLRADWPQGGYRLFNPLNGETLESTLLAVWLKGHQ
GMQAHMSSGDIEAAENSQVVRRLLTTLKAALMEEQQVELALNACEALLCFEPEDPYEIRDRGLLYVRLECPHIALSDLSY
FIEQCPEDPVADVIRLQIHAIEQFEVVLH

Sequences:

>Translated_269_residues
MSVIADFAFDEALLSDGVLQMQHAVRPELDPARLRAELDGLAAQAQTALQGVCGEQARLQRLLALFFDEWGFGGVSGVYR
LSDALWLDTVLARRQGTPASLGIILQHIAQALALPLQAVVFPTQLLLRADWPQGGYRLFNPLNGETLESTLLAVWLKGHQ
GMQAHMSSGDIEAAENSQVVRRLLTTLKAALMEEQQVELALNACEALLCFEPEDPYEIRDRGLLYVRLECPHIALSDLSY
FIEQCPEDPVADVIRLQIHAIEQFEVVLH
>Mature_268_residues
SVIADFAFDEALLSDGVLQMQHAVRPELDPARLRAELDGLAAQAQTALQGVCGEQARLQRLLALFFDEWGFGGVSGVYRL
SDALWLDTVLARRQGTPASLGIILQHIAQALALPLQAVVFPTQLLLRADWPQGGYRLFNPLNGETLESTLLAVWLKGHQG
MQAHMSSGDIEAAENSQVVRRLLTTLKAALMEEQQVELALNACEALLCFEPEDPYEIRDRGLLYVRLECPHIALSDLSYF
IEQCPEDPVADVIRLQIHAIEQFEVVLH

Specific function: Not essential for the expression of the invasive phenotype. Required for maximal expression of sirC [H]

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=269, Percent_Identity=50.1858736059479, Blast_Score=274, Evalue=5e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29821; Mature: 29689

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIADFAFDEALLSDGVLQMQHAVRPELDPARLRAELDGLAAQAQTALQGVCGEQARLQ
CCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLLALFFDEWGFGGVSGVYRLSDALWLDTVLARRQGTPASLGIILQHIAQALALPLQAVV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FPTQLLLRADWPQGGYRLFNPLNGETLESTLLAVWLKGHQGMQAHMSSGDIEAAENSQVV
HHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHH
RRLLTTLKAALMEEQQVELALNACEALLCFEPEDPYEIRDRGLLYVRLECPHIALSDLSY
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHCCCCEEEEEEECCCHHHHHHHH
FIEQCPEDPVADVIRLQIHAIEQFEVVLH
HHHHCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SVIADFAFDEALLSDGVLQMQHAVRPELDPARLRAELDGLAAQAQTALQGVCGEQARLQ
CCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
RLLALFFDEWGFGGVSGVYRLSDALWLDTVLARRQGTPASLGIILQHIAQALALPLQAVV
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
FPTQLLLRADWPQGGYRLFNPLNGETLESTLLAVWLKGHQGMQAHMSSGDIEAAENSQVV
HHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCHHHH
RRLLTTLKAALMEEQQVELALNACEALLCFEPEDPYEIRDRGLLYVRLECPHIALSDLSY
HHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHCCCCEEEEEEECCCHHHHHHHH
FIEQCPEDPVADVIRLQIHAIEQFEVVLH
HHHHCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]