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The map label for this gene is yhcD [H]

Identifier: 238919448

GI number: 238919448

Start: 1506879

End: 1509395

Strand: Direct

Name: yhcD [H]

Synonym: NT01EI_1542

Alternate gene names: 238919448

Gene position: 1506879-1509395 (Clockwise)

Preceding gene: 238919447

Following gene: 238919449

Centisome position: 39.53

GC content: 41.95

Gene sequence:

>2517_bases
ATGAAATCAGATTATTGTATCTTAGTGCTCTCTATGGCTCCAATAATTACTGCATACTCATCATCGGCTCATGCAGAGTT
TGAGGCGAGCATGCTGAAACAACTTGGGGTTTCTGCCTCCACCCTTGATCAATTGGAGAGTAATAAGTCTCCAGCAGGTA
AATATCTGGTTGATGTGTATCTGAACGGTAATAAAGTGACATCAGATTGGGTCATGGTTGGTGATGATGGTGAGGTAAAA
AAAGATGGTCAGTTTTTCTCATTGATTTTCCCAGAGATAGATCCTTCGCAGTTTTCAAAGGAAGAAATTTCCTCTATGAA
AGTGGAGTTAAACAGAACCACATCATCCTTGCAGGTGGTTATTCCAGAGGCATTATTCAAAAAGTATTATGAAGAGTATC
CATCAAAAAATTTAGGCGCATTGCTTAATTATACTTTTAGTATGAGTCGATCTTCGATTAAGCGTCATTACTCACAATAT
CCAACAACTGGTATTGCTACGCTGCTTAATTATAATCTGAGCGCCAGCAATTCTCAACTGTCATCGACGACTGAAAGGCA
GTCTTTTTCATCAGTTTTTGGTAAGTTTGAGACGAATTTACTATTCAATGGCTGGTCATTGAAAAATAACATGTATTATT
CCAAGCAGAATAAAGATTCTAATTTTTACCGTGAAAGTTCATTTGTTGAGCGTAAGTTTGAAAGTGGAGAGCAAGTCCAG
GCGGGTGAGATTGTCACACAAAACTCATTATTTTCTGGTCTGTCACTGGTTGGTGCGCAGTATGCACCGGAAACCTCGTT
TACTCAGTTGGGTACCACACAGGCGATTAAGGGGTTTGCTGATACGCCATCAAAAATTGAAGTTGTGCAAAATGGCAATG
TGATATATAGCACCCGGGTTCCTGTCGGGGACTTTGCCTTGAGTAATGTTCCTGTTAATACCGCATCACAAAACCTGATG
ATTAGAATTGTCGGTGATGATGGTCGTATCGTTACGTATCCTTATGTTGTTGGCAATGCGATTAATACCTCTTCCAATAG
TTGGTATTCCATTGCCTTGGGGCAGTTTAGGAATACGGCCAACATTTCTGGAAGCAGGTCCATGAACAGTAATAGCAATA
CTGCGATGCCTGAGAAAAATAAGTTTACGTTGACCGGTACATATAACCTGGCACTCAGTCAAAAACAGAATATTTCTGTT
TCTGCGTTGATTACCGAAGCCTATCAAAATATGGCTACTGCCTATTCTATAAACCTCTTTGACAACGTGATTGCCGGAAC
ATATCAGATGTTCTTTTCCCGTTACGGCAGAACCAGTCAGACTGGAGGGAAAATCAGTGCCTCAACAAATATCAATATTG
AGCGTGCAACAGCATCATTGAACTATTCCTACAGAAGTCAGGACTATCTGGACCCATATGATATTTATGGAGGTGCATCT
CCACTGTTAACAAATGATGGAAGAATCGATAACTCCAATAAATTAAAGCAGTCACTGTCCACATCACTTTCATATCCATT
ACCAGCCAATATTGCTGCCTCGGTCGGTGTCGGTGTCGACCAATATTATTCTGGGAAAAGCTATAAGCGGATGTACGCAT
CTTTGTCAAAACAGTTTAAATATGCAACAGCATCAGTATTTCTGCAAAAGTCTGATAATGAGAACTCTGTATTCCTGAAT
GTCTCTATTCCTATGGGGGGATGGGGAATAATGGGCTCATCTTTTTCTAAAGTCGCTGATCAGCAGTCCATTACAACCAC
ATACACCAACAGTTATCTGGATCGGAAAGCGAATGTAACGGTTGGCACCAATAGCATTAAAACCAAGGTTGGTGGGAATA
TGTACTCCTTTGCTCAGGGATCCTATCGGGGGGCCATGACTACCTATACCGGGGGGGTTACTTATAATAAGCAAAAGGAT
CTGCAGGGGATGTCTTATAATGCTGGGATCTCTGGTGGGGTGGCGATTACGAAAAAAGGGATTGATTTTTCATCTGATCG
TATCGACGATACTTTTGCGATTGCCTCAGTAGAGGGAGAGAATGGCGTTGTCATTGACGGGCCCAGCGGTCCAGTTTCCC
CCACTATTACCGGGCGGGCTGTTATATCAAAGGTTTATCCATACCGGCCTAATAATATTTCAGTCAATATGGATGGGTTG
CCTCAGGATGTATATGCCATTGGTGGAGAGGAGACGGTGAAATCCGGGTTTGGCGGCATATCCTATGTGACCTTTAAATT
CGGTAAGAATATTACGGGTCTGTATAAACTGCTGGCGAAAGTGGGTGAGCCTTTGATTGCCGGTGCCGTGGTTGCCACCG
ACAGTGGTGAGTTTGTGACCGTTGTCGGTCCGGAGCAAAACTTAGCCATTGACTATAAAGCAAAAACAGATCAAGGGGCA
CAGCATGTGTATAAGTATCTGGTATCTGAAAACGATGTTCCTCGGTGTAAGTTTGAATTAACGGAAAAATTGATTAAAGA
GAAAAGTGGAGATGTAATCTGCTATCCGTTAAAGTAA

Upstream 100 bases:

>100_bases
GTCCCGTCTCAACCACAGCAAGTATTCTACCACCTTATACCATCACAAACTAATCAGTTAATTGGTGAGCAATCAGCGCC
CTTACGTGTTGAGGTGAGGC

Downstream 100 bases:

>100_bases
AAACACCTCTTAGCAAAATAATAAATGCATTCATCGGTGTATCGGAGAGTTCGGTGAAATAGCGTGCAGGGATTATCTCG
CTAGGGTTATTTCGACAGTT

Product: outer membrane fimbrial usher

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 838; Mature: 838

Protein sequence:

>838_residues
MKSDYCILVLSMAPIITAYSSSAHAEFEASMLKQLGVSASTLDQLESNKSPAGKYLVDVYLNGNKVTSDWVMVGDDGEVK
KDGQFFSLIFPEIDPSQFSKEEISSMKVELNRTTSSLQVVIPEALFKKYYEEYPSKNLGALLNYTFSMSRSSIKRHYSQY
PTTGIATLLNYNLSASNSQLSSTTERQSFSSVFGKFETNLLFNGWSLKNNMYYSKQNKDSNFYRESSFVERKFESGEQVQ
AGEIVTQNSLFSGLSLVGAQYAPETSFTQLGTTQAIKGFADTPSKIEVVQNGNVIYSTRVPVGDFALSNVPVNTASQNLM
IRIVGDDGRIVTYPYVVGNAINTSSNSWYSIALGQFRNTANISGSRSMNSNSNTAMPEKNKFTLTGTYNLALSQKQNISV
SALITEAYQNMATAYSINLFDNVIAGTYQMFFSRYGRTSQTGGKISASTNINIERATASLNYSYRSQDYLDPYDIYGGAS
PLLTNDGRIDNSNKLKQSLSTSLSYPLPANIAASVGVGVDQYYSGKSYKRMYASLSKQFKYATASVFLQKSDNENSVFLN
VSIPMGGWGIMGSSFSKVADQQSITTTYTNSYLDRKANVTVGTNSIKTKVGGNMYSFAQGSYRGAMTTYTGGVTYNKQKD
LQGMSYNAGISGGVAITKKGIDFSSDRIDDTFAIASVEGENGVVIDGPSGPVSPTITGRAVISKVYPYRPNNISVNMDGL
PQDVYAIGGEETVKSGFGGISYVTFKFGKNITGLYKLLAKVGEPLIAGAVVATDSGEFVTVVGPEQNLAIDYKAKTDQGA
QHVYKYLVSENDVPRCKFELTEKLIKEKSGDVICYPLK

Sequences:

>Translated_838_residues
MKSDYCILVLSMAPIITAYSSSAHAEFEASMLKQLGVSASTLDQLESNKSPAGKYLVDVYLNGNKVTSDWVMVGDDGEVK
KDGQFFSLIFPEIDPSQFSKEEISSMKVELNRTTSSLQVVIPEALFKKYYEEYPSKNLGALLNYTFSMSRSSIKRHYSQY
PTTGIATLLNYNLSASNSQLSSTTERQSFSSVFGKFETNLLFNGWSLKNNMYYSKQNKDSNFYRESSFVERKFESGEQVQ
AGEIVTQNSLFSGLSLVGAQYAPETSFTQLGTTQAIKGFADTPSKIEVVQNGNVIYSTRVPVGDFALSNVPVNTASQNLM
IRIVGDDGRIVTYPYVVGNAINTSSNSWYSIALGQFRNTANISGSRSMNSNSNTAMPEKNKFTLTGTYNLALSQKQNISV
SALITEAYQNMATAYSINLFDNVIAGTYQMFFSRYGRTSQTGGKISASTNINIERATASLNYSYRSQDYLDPYDIYGGAS
PLLTNDGRIDNSNKLKQSLSTSLSYPLPANIAASVGVGVDQYYSGKSYKRMYASLSKQFKYATASVFLQKSDNENSVFLN
VSIPMGGWGIMGSSFSKVADQQSITTTYTNSYLDRKANVTVGTNSIKTKVGGNMYSFAQGSYRGAMTTYTGGVTYNKQKD
LQGMSYNAGISGGVAITKKGIDFSSDRIDDTFAIASVEGENGVVIDGPSGPVSPTITGRAVISKVYPYRPNNISVNMDGL
PQDVYAIGGEETVKSGFGGISYVTFKFGKNITGLYKLLAKVGEPLIAGAVVATDSGEFVTVVGPEQNLAIDYKAKTDQGA
QHVYKYLVSENDVPRCKFELTEKLIKEKSGDVICYPLK
>Mature_838_residues
MKSDYCILVLSMAPIITAYSSSAHAEFEASMLKQLGVSASTLDQLESNKSPAGKYLVDVYLNGNKVTSDWVMVGDDGEVK
KDGQFFSLIFPEIDPSQFSKEEISSMKVELNRTTSSLQVVIPEALFKKYYEEYPSKNLGALLNYTFSMSRSSIKRHYSQY
PTTGIATLLNYNLSASNSQLSSTTERQSFSSVFGKFETNLLFNGWSLKNNMYYSKQNKDSNFYRESSFVERKFESGEQVQ
AGEIVTQNSLFSGLSLVGAQYAPETSFTQLGTTQAIKGFADTPSKIEVVQNGNVIYSTRVPVGDFALSNVPVNTASQNLM
IRIVGDDGRIVTYPYVVGNAINTSSNSWYSIALGQFRNTANISGSRSMNSNSNTAMPEKNKFTLTGTYNLALSQKQNISV
SALITEAYQNMATAYSINLFDNVIAGTYQMFFSRYGRTSQTGGKISASTNINIERATASLNYSYRSQDYLDPYDIYGGAS
PLLTNDGRIDNSNKLKQSLSTSLSYPLPANIAASVGVGVDQYYSGKSYKRMYASLSKQFKYATASVFLQKSDNENSVFLN
VSIPMGGWGIMGSSFSKVADQQSITTTYTNSYLDRKANVTVGTNSIKTKVGGNMYSFAQGSYRGAMTTYTGGVTYNKQKD
LQGMSYNAGISGGVAITKKGIDFSSDRIDDTFAIASVEGENGVVIDGPSGPVSPTITGRAVISKVYPYRPNNISVNMDGL
PQDVYAIGGEETVKSGFGGISYVTFKFGKNITGLYKLLAKVGEPLIAGAVVATDSGEFVTVVGPEQNLAIDYKAKTDQGA
QHVYKYLVSENDVPRCKFELTEKLIKEKSGDVICYPLK

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1789610, Length=713, Percent_Identity=23.2819074333801, Blast_Score=138, Evalue=1e-33,
Organism=Escherichia coli, GI1788427, Length=801, Percent_Identity=20.5992509363296, Blast_Score=77, Evalue=4e-15,
Organism=Escherichia coli, GI1790772, Length=372, Percent_Identity=24.4623655913978, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1789533, Length=412, Percent_Identity=23.0582524271845, Blast_Score=73, Evalue=9e-14,
Organism=Escherichia coli, GI1786332, Length=858, Percent_Identity=21.2121212121212, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91398; Mature: 91398

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSDYCILVLSMAPIITAYSSSAHAEFEASMLKQLGVSASTLDQLESNKSPAGKYLVDVY
CCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEE
LNGNKVTSDWVMVGDDGEVKKDGQFFSLIFPEIDPSQFSKEEISSMKVELNRTTSSLQVV
ECCCEEECCEEEECCCCCCCCCCCEEEEECCCCCHHHCCHHHHHHEEEEEECCCCEEEEE
IPEALFKKYYEEYPSKNLGALLNYTFSMSRSSIKRHYSQYPTTGIATLLNYNLSASNSQL
EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHH
SSTTERQSFSSVFGKFETNLLFNGWSLKNNMYYSKQNKDSNFYRESSFVERKFESGEQVQ
HHHHHHHHHHHHHHCCCCEEEEECEEECCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
AGEIVTQNSLFSGLSLVGAQYAPETSFTQLGTTQAIKGFADTPSKIEVVQNGNVIYSTRV
CCCEEECCHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCCCCCCCEEEEEECCCEEEEECC
PVGDFALSNVPVNTASQNLMIRIVGDDGRIVTYPYVVGNAINTSSNSWYSIALGQFRNTA
CCCCCEECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCEEECCCCCEEEEEEECCCCCC
NISGSRSMNSNSNTAMPEKNKFTLTGTYNLALSQKQNISVSALITEAYQNMATAYSINLF
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEHHHHHHHHHHHHEEEEEHH
DNVIAGTYQMFFSRYGRTSQTGGKISASTNINIERATASLNYSYRSQDYLDPYDIYGGAS
HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCHHHCCCCC
PLLTNDGRIDNSNKLKQSLSTSLSYPLPANIAASVGVGVDQYYSGKSYKRMYASLSKQFK
CCEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHH
YATASVFLQKSDNENSVFLNVSIPMGGWGIMGSSFSKVADQQSITTTYTNSYLDRKANVT
EEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEHHHHHCCCCEEE
VGTNSIKTKVGGNMYSFAQGSYRGAMTTYTGGVTYNKQKDLQGMSYNAGISGGVAITKKG
ECCCCEEECCCCCEEEECCCCCCCCEEEEECCEEECCCCCCCCCEECCCCCCCEEEEECC
IDFSSDRIDDTFAIASVEGENGVVIDGPSGPVSPTITGRAVISKVYPYRPNNISVNMDGL
CCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCC
PQDVYAIGGEETVKSGFGGISYVTFKFGKNITGLYKLLAKVGEPLIAGAVVATDSGEFVT
CCHHEECCCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEE
VVGPEQNLAIDYKAKTDQGAQHVYKYLVSENDVPRCKFELTEKLIKEKSGDVICYPLK
EECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure
MKSDYCILVLSMAPIITAYSSSAHAEFEASMLKQLGVSASTLDQLESNKSPAGKYLVDVY
CCCCEEEEEEEHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEEEE
LNGNKVTSDWVMVGDDGEVKKDGQFFSLIFPEIDPSQFSKEEISSMKVELNRTTSSLQVV
ECCCEEECCEEEECCCCCCCCCCCEEEEECCCCCHHHCCHHHHHHEEEEEECCCCEEEEE
IPEALFKKYYEEYPSKNLGALLNYTFSMSRSSIKRHYSQYPTTGIATLLNYNLSASNSQL
EHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHH
SSTTERQSFSSVFGKFETNLLFNGWSLKNNMYYSKQNKDSNFYRESSFVERKFESGEQVQ
HHHHHHHHHHHHHHCCCCEEEEECEEECCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEE
AGEIVTQNSLFSGLSLVGAQYAPETSFTQLGTTQAIKGFADTPSKIEVVQNGNVIYSTRV
CCCEEECCHHHHHHHHHCCCCCCCCCHHHCCCHHHHCCCCCCCCEEEEEECCCEEEEECC
PVGDFALSNVPVNTASQNLMIRIVGDDGRIVTYPYVVGNAINTSSNSWYSIALGQFRNTA
CCCCCEECCCCCCCCCCCEEEEEECCCCCEEEEEEEECCEEECCCCCEEEEEEECCCCCC
NISGSRSMNSNSNTAMPEKNKFTLTGTYNLALSQKQNISVSALITEAYQNMATAYSINLF
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCEEEHHHHHHHHHHHHEEEEEHH
DNVIAGTYQMFFSRYGRTSQTGGKISASTNINIERATASLNYSYRSQDYLDPYDIYGGAS
HHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCHHHCCCCC
PLLTNDGRIDNSNKLKQSLSTSLSYPLPANIAASVGVGVDQYYSGKSYKRMYASLSKQFK
CCEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHCCCCHHHHHHHHHHHHHH
YATASVFLQKSDNENSVFLNVSIPMGGWGIMGSSFSKVADQQSITTTYTNSYLDRKANVT
EEEEEEEEEECCCCCEEEEEEEECCCCCCCCCCCHHHHHCCCCEEEEEHHHHHCCCCEEE
VGTNSIKTKVGGNMYSFAQGSYRGAMTTYTGGVTYNKQKDLQGMSYNAGISGGVAITKKG
ECCCCEEECCCCCEEEECCCCCCCCEEEEECCEEECCCCCCCCCEECCCCCCCEEEEECC
IDFSSDRIDDTFAIASVEGENGVVIDGPSGPVSPTITGRAVISKVYPYRPNNISVNMDGL
CCCCCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCC
PQDVYAIGGEETVKSGFGGISYVTFKFGKNITGLYKLLAKVGEPLIAGAVVATDSGEFVT
CCHHEECCCCHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEE
VVGPEQNLAIDYKAKTDQGAQHVYKYLVSENDVPRCKFELTEKLIKEKSGDVICYPLK
EECCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]