| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919411
Identifier: 238919411
GI number: 238919411
Start: 1475512
End: 1476651
Strand: Direct
Name: 238919411
Synonym: NT01EI_1505
Alternate gene names: NA
Gene position: 1475512-1476651 (Clockwise)
Preceding gene: 238919410
Following gene: 238919413
Centisome position: 38.7
GC content: 51.05
Gene sequence:
>1140_bases ATGTATTGCGTAATAGGGGAAAGGCTGCTGCGTTATCTGATGTATGGCATTGTAGCGCTGTCGCTGATGGCAAAAAGCCA TGCTATCGTGGTGGATCTTGCCGTCTTTAATCAGGATGTCAGAATAGCTTATGGTGCGGCTGGCCGGCTGCAGGTCCTGG GTAATGGCATCGTGCAGGCCCAGGATAACTACCCTGAGCTGGTCGGTTTTAATGTCTATGATTTTGGTAGCAGGACTAAT CAGATTGATACGCCCGATATTGCCTTTCACCGCAGAGGCAGCCTGTTCAGCGTCACCCTGACCGGGGCGCGCTACGGCAG GTCGATAACCCTGCGTGGCAAGCTGGGCAAGTCTATCTTTCTGCAGCCTTCGGTGATAGGTGGCAGTTATAATCGGATCA GTGAAAATAAGGGATGCAGCGGCGGAATTCAGTATGATCGCCCGTTAAGGGATGGTGAGCCGATCAATGGTATCTGGAAT TTTATCGACCCGGGAACCTATGATTTTACTCAGGACTGCAGCGGGAATACCTATCCTTTTGTCTATGTAAATCCCTACCC TGTCGTGACCTATGACGATGCCAGAACAGTATGGCTGGATCTTCCTGCCCTGATCGCCAGCGATGCCTGGCAATCGCTGC CACCTGATGTTTATAGCGGCAGCAGCAGCTCAGCCTTTGAGTACTTCTATAGTCCGCAAACGGGCCAGACGTTTAATTTA AATACCGCCACCGCAGTAACGATACGCAAGCAGCCCTATTTCAGCGGGATATCCATCCCCTCAACCCATGTGGTATTCAA CACGACCTATACTCAGGAGCAGGTGACAGGGCGCGCCTCCACACCGCTGCTTTTGGAGGGATCATTTGACCAGGTACGCA TTGGTATATTTACGGGTAATAACTATGCATTGCGTAACGATGTTGATGGCCGGGATCTGCCTTATCAGGCGGTGTTGCAT CAGGGAGCCGAGCGACATGTATTAAATACGGATGATACCTTCGTGGTGAGTGGTTTAAACAACCCCTCAAATCAGATCCC TCTGACCCTGACCTTTCAGTTTGACCAGCCCAGAGAGCGGGTGACGAGCGGCACCTATCGCGATTACCTCATTTTGTTAG CTGAGGTACCGCTATTATAA
Upstream 100 bases:
>100_bases GGGTCGTCTGCAACGGGCAGGTCACCCTGCTGCTGAGCGTGCCGCTCTGAGAGGTATCGCGGCCCTGAGCCGGCGGTGTG ATGTTATGTCAGGAGGAAGT
Downstream 100 bases:
>100_bases CCGGTTATCATGGCACGGTTATAATCTCAGCTGCGTGCGGCCAGACTCCGCATGGAGTGCGCGTCATCAGCCCCCATCGC GGGGGCGCCCACGGCGTTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MYCVIGERLLRYLMYGIVALSLMAKSHAIVVDLAVFNQDVRIAYGAAGRLQVLGNGIVQAQDNYPELVGFNVYDFGSRTN QIDTPDIAFHRRGSLFSVTLTGARYGRSITLRGKLGKSIFLQPSVIGGSYNRISENKGCSGGIQYDRPLRDGEPINGIWN FIDPGTYDFTQDCSGNTYPFVYVNPYPVVTYDDARTVWLDLPALIASDAWQSLPPDVYSGSSSSAFEYFYSPQTGQTFNL NTATAVTIRKQPYFSGISIPSTHVVFNTTYTQEQVTGRASTPLLLEGSFDQVRIGIFTGNNYALRNDVDGRDLPYQAVLH QGAERHVLNTDDTFVVSGLNNPSNQIPLTLTFQFDQPRERVTSGTYRDYLILLAEVPLL
Sequences:
>Translated_379_residues MYCVIGERLLRYLMYGIVALSLMAKSHAIVVDLAVFNQDVRIAYGAAGRLQVLGNGIVQAQDNYPELVGFNVYDFGSRTN QIDTPDIAFHRRGSLFSVTLTGARYGRSITLRGKLGKSIFLQPSVIGGSYNRISENKGCSGGIQYDRPLRDGEPINGIWN FIDPGTYDFTQDCSGNTYPFVYVNPYPVVTYDDARTVWLDLPALIASDAWQSLPPDVYSGSSSSAFEYFYSPQTGQTFNL NTATAVTIRKQPYFSGISIPSTHVVFNTTYTQEQVTGRASTPLLLEGSFDQVRIGIFTGNNYALRNDVDGRDLPYQAVLH QGAERHVLNTDDTFVVSGLNNPSNQIPLTLTFQFDQPRERVTSGTYRDYLILLAEVPLL >Mature_379_residues MYCVIGERLLRYLMYGIVALSLMAKSHAIVVDLAVFNQDVRIAYGAAGRLQVLGNGIVQAQDNYPELVGFNVYDFGSRTN QIDTPDIAFHRRGSLFSVTLTGARYGRSITLRGKLGKSIFLQPSVIGGSYNRISENKGCSGGIQYDRPLRDGEPINGIWN FIDPGTYDFTQDCSGNTYPFVYVNPYPVVTYDDARTVWLDLPALIASDAWQSLPPDVYSGSSSSAFEYFYSPQTGQTFNL NTATAVTIRKQPYFSGISIPSTHVVFNTTYTQEQVTGRASTPLLLEGSFDQVRIGIFTGNNYALRNDVDGRDLPYQAVLH QGAERHVLNTDDTFVVSGLNNPSNQIPLTLTFQFDQPRERVTSGTYRDYLILLAEVPLL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42053; Mature: 42053
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYCVIGERLLRYLMYGIVALSLMAKSHAIVVDLAVFNQDVRIAYGAAGRLQVLGNGIVQA CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEECCCCEEEEECCCEEEE QDNYPELVGFNVYDFGSRTNQIDTPDIAFHRRGSLFSVTLTGARYGRSITLRGKLGKSIF CCCCCCEEECEEEECCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCEEE LQPSVIGGSYNRISENKGCSGGIQYDRPLRDGEPINGIWNFIDPGTYDFTQDCSGNTYPF EECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEE VYVNPYPVVTYDDARTVWLDLPALIASDAWQSLPPDVYSGSSSSAFEYFYSPQTGQTFNL EEECCEEEEEECCCEEEEEECHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCCEEEC NTATAVTIRKQPYFSGISIPSTHVVFNTTYTQEQVTGRASTPLLLEGSFDQVRIGIFTGN CCEEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHCCCCCCCEEEECCCCEEEEEEEECC NYALRNDVDGRDLPYQAVLHQGAERHVLNTDDTFVVSGLNNPSNQIPLTLTFQFDQPRER CEEEECCCCCCCCCHHHHHHCCCCCCEECCCCEEEEECCCCCCCCCCEEEEEECCCCHHH VTSGTYRDYLILLAEVPLL HCCCCHHHEEEEEEECCCC >Mature Secondary Structure MYCVIGERLLRYLMYGIVALSLMAKSHAIVVDLAVFNQDVRIAYGAAGRLQVLGNGIVQA CEEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCEEEEECCCCEEEEECCCEEEE QDNYPELVGFNVYDFGSRTNQIDTPDIAFHRRGSLFSVTLTGARYGRSITLRGKLGKSIF CCCCCCEEECEEEECCCCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCEEE LQPSVIGGSYNRISENKGCSGGIQYDRPLRDGEPINGIWNFIDPGTYDFTQDCSGNTYPF EECEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEE VYVNPYPVVTYDDARTVWLDLPALIASDAWQSLPPDVYSGSSSSAFEYFYSPQTGQTFNL EEECCEEEEEECCCEEEEEECHHHHHHHHHHHCCCHHHCCCCCCEEEEEECCCCCCEEEC NTATAVTIRKQPYFSGISIPSTHVVFNTTYTQEQVTGRASTPLLLEGSFDQVRIGIFTGN CCEEEEEEECCCCCCCCCCCCEEEEEEEEECHHHHCCCCCCCEEEECCCCEEEEEEEECC NYALRNDVDGRDLPYQAVLHQGAERHVLNTDDTFVVSGLNNPSNQIPLTLTFQFDQPRER CEEEECCCCCCCCCHHHHHHCCCCCCEECCCCEEEEECCCCCCCCCCEEEEEECCCCHHH VTSGTYRDYLILLAEVPLL HCCCCHHHEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA