| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is 238919409
Identifier: 238919409
GI number: 238919409
Start: 1472281
End: 1474863
Strand: Direct
Name: 238919409
Synonym: NT01EI_1503
Alternate gene names: NA
Gene position: 1472281-1474863 (Clockwise)
Preceding gene: 238919408
Following gene: 238919410
Centisome position: 38.62
GC content: 62.95
Gene sequence:
>2583_bases TTGAAGATGAAGATGACCATGACGAGTTTCCAGATGAGCATCATAAAAATATTACCGGTTACCGGTCTGCTCGCAGGCGC TGCATGGGCGGCGCCCTCACTTCCGACAGATACGCTGGCCAGCAATCACCGTGGGCTGGCGCAGGGCGCTGTCGCCACCC AGACGCTGGCACACAATGATATGACGCTGGCCCAGAACAATGCGACGCTGGCCATGGCGCATGGCATGTCGCTGGCTTCC GGGGTCCCGCTGGCCCGCTCCCGCTACGGCAAAATCCTGACCCCCAGCCCGATGGCGATTACCCTGGTGATCCCCCAGGT GGATGAGGCCCGCTTTGAGGGGGAGCTTGCCCTGGACAGCGTGCGGATTGACGACAGCGCCGCGGTGGCGGCGTTTTTAT CCCGCGCCGGGTTGAGCCAGAAACAGGCAGACGAGGTGGCCCGCCAGTTTGCGGCCGGGGTGTCCCACGACAGCCGCTGC AAGGGCAGCCGGGCGACCTGTGTCCTCAGCAGCGAGGGGATGGCGGTGGTGATCGACTATTATGCACGTCAGGTCCGCCT TTTCTTTGCCCCCGCCTACTTTGCCCGCGAGACGCGTCAGGTTGAATATCTGCAGGGAGATGAGGGGAAAAAGGTGCTGG TCAACCATGCCAGCCTCTTTGCCAACCGCTATGCGAATCAGGGCAACAGCCTCTATGCCCGCGACTATGGCCTGTGGGGG TTGCCCGGCGGCTTTCTGAAATACGATGCCTACGTCACCGACCGGGACTATGGCATCAATGCGCTGAACTATGTCTATCA ATACCAGTGGTTCAAGGCACAGCTGGGCGCGGTCGACAACAGCTACGACTTTAACCCCTCGGCACAGCGCAGCCTGTTTA AAAACAGTCAGATGACCGCCCTCCTGCTCGGTAACTCCGCGGAGATGCAGGTGCGGAGCCAGAACGATCGCCATTACACC TACTACGCCCCGCTGCCGGGGGTGCTGGAGGTGTGGCGCGACGATAAACTGCTGCTGCGCCGCGGTGTCAACGCCGGCAT GGGGGAGCTTGCCTACCAAAGCCTGCCGACGGGGATCTATCAGGCGCGGGTTGTCATCAAGGGGTTGAATGACGAGCTGT TTTCCGACCAGTCCCTGCTGCTGGTCAACGATGGCCCGACCCTGGAGGGGGTCAGCACCCACCTCAGCGTCGGACGCCTG GACGATCACGCCTATTACGGTAACGCCTGGATGGGCGAGCTGGGCGTCACGGTACCGCTGGGCGACATCGTCAGCCTGTC CGGGCTGACCGGCTATGCCGACCGTGAGTTTCTGGGCACCCTGGGGGCCGATATCCGCAGCAGCAACCTCACCCTGTCGC TGCTGCAGACCCTGGGCAGCCAGGGGTATCAGAAGAGCGATCTGGTCGCCACCTACTACCCGCTCTCGCTGCAATACACC CGTGAGCGCTACCGCCAGCGTGAGCGTCCCTTCGTCCGCACCCTGCCGGGCGCGGTGGAGCCTGACGACGTGCTGCAGCC CAGCCTGATCCCGGACTATCTGGACCAGCACCCCGGCATGTCGGCCAACCGCGAAAACCTGCTGGCCAACTACAGCGTAG CCCTGCATCAGGACCATACGCTGCAGCTCGGCTACCAGTTTTTCCGCGAGCAGTCCCAGCGGAGCCAATACTATACGCTG TCGCTGTTCAGCCGCTTACCCTGGAATATCAATCTCACCGCCAGCCTCAACTACGCCCGGAACGACCTCTGGAGCGCCTC GGTGGGGCTCTCGGTGCCGATAGGCAGCCTGCAGGCCAGCAGCTACTACTCGCAGCAAAACGCGGGTCGCTGGCGCAGCC AGAACACCCTGAACTATAGCCAGAGTCTGGCGGAGGCGTGGCTGGTTAACCTGCAGGGTGGCCAGCAGTTCTCCGACAAC GGCGCGCAGACCACCTTCTCGGCCGGTGCGCAATACCGGGGCAGCGCGGATGTCCGTGCGCAGGTCTATCTGGCCAGCGA TCAGTCGGGTGCAGCCGGCAGCCTCGATGTGCAGTCCAGCCAGCTGATCGCCTCAGACGGGATATCGTTCCAGCGGCCGG ATGCGCTGAGCCAACAGGCGTTTCTGCGCCTGCCGGCAGAGGAGAAAGGGGCGGTGTCGGTGGCACTGAAAGAGCAGAGC AGCGGGATGACCCGCTACTACACGGAGGGCGGGGGAAAAATCATCGCCCTGCCGGCCTACAGCCGTTACCAGCTGGATGA GCGGCTGATTGGCGGGAGCCGTGTCTTTGACAACCATCAGTCGCGTTATCAGCAGCAGATCGATCTGCTGCCCGGGCGTT TGGTCGATACCACGCGCGCGGTATTGCCGGTGCGCAATCAGGCCATACGGGTCCGGCAGCAGGGGAATGGGGTGGATCAA CTGCGCTGTGAGGGGGCCGGCTGCATTGGGGTACAGCGGATACAGAGCGGCCTGTTTATGCTGCAGCTGCACCCCACCGG GGCGATTACCCTGCTGTCTGAGGGGCGGCCATGTGCCTCGCTCTCTTCGGCGCTGCAGCTGCCGGCCGATCAACTACCCA TCGTGGAGTGTAAGAGTGAATAA
Upstream 100 bases:
>100_bases ATAAAAAAGAGATCGCCCTGCGCCCGGCCAGATAAGGAAATTACCCATCGTCTGTCAGACAGCAGCCTGCGCTAACGCGC CTGACAGGGTGTCACCCGGC
Downstream 100 bases:
>100_bases ACGTCAGGTAAGCGTGGGGATTGGGTTAAGTCTCGGGCTGTGGCTGAGCGGCGCAGCGCAGGGCTTTGAGCTGCGCAATA ACGCTCAGGTGCTGGAAGAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 860; Mature: 860
Protein sequence:
>860_residues MKMKMTMTSFQMSIIKILPVTGLLAGAAWAAPSLPTDTLASNHRGLAQGAVATQTLAHNDMTLAQNNATLAMAHGMSLAS GVPLARSRYGKILTPSPMAITLVIPQVDEARFEGELALDSVRIDDSAAVAAFLSRAGLSQKQADEVARQFAAGVSHDSRC KGSRATCVLSSEGMAVVIDYYARQVRLFFAPAYFARETRQVEYLQGDEGKKVLVNHASLFANRYANQGNSLYARDYGLWG LPGGFLKYDAYVTDRDYGINALNYVYQYQWFKAQLGAVDNSYDFNPSAQRSLFKNSQMTALLLGNSAEMQVRSQNDRHYT YYAPLPGVLEVWRDDKLLLRRGVNAGMGELAYQSLPTGIYQARVVIKGLNDELFSDQSLLLVNDGPTLEGVSTHLSVGRL DDHAYYGNAWMGELGVTVPLGDIVSLSGLTGYADREFLGTLGADIRSSNLTLSLLQTLGSQGYQKSDLVATYYPLSLQYT RERYRQRERPFVRTLPGAVEPDDVLQPSLIPDYLDQHPGMSANRENLLANYSVALHQDHTLQLGYQFFREQSQRSQYYTL SLFSRLPWNINLTASLNYARNDLWSASVGLSVPIGSLQASSYYSQQNAGRWRSQNTLNYSQSLAEAWLVNLQGGQQFSDN GAQTTFSAGAQYRGSADVRAQVYLASDQSGAAGSLDVQSSQLIASDGISFQRPDALSQQAFLRLPAEEKGAVSVALKEQS SGMTRYYTEGGGKIIALPAYSRYQLDERLIGGSRVFDNHQSRYQQQIDLLPGRLVDTTRAVLPVRNQAIRVRQQGNGVDQ LRCEGAGCIGVQRIQSGLFMLQLHPTGAITLLSEGRPCASLSSALQLPADQLPIVECKSE
Sequences:
>Translated_860_residues MKMKMTMTSFQMSIIKILPVTGLLAGAAWAAPSLPTDTLASNHRGLAQGAVATQTLAHNDMTLAQNNATLAMAHGMSLAS GVPLARSRYGKILTPSPMAITLVIPQVDEARFEGELALDSVRIDDSAAVAAFLSRAGLSQKQADEVARQFAAGVSHDSRC KGSRATCVLSSEGMAVVIDYYARQVRLFFAPAYFARETRQVEYLQGDEGKKVLVNHASLFANRYANQGNSLYARDYGLWG LPGGFLKYDAYVTDRDYGINALNYVYQYQWFKAQLGAVDNSYDFNPSAQRSLFKNSQMTALLLGNSAEMQVRSQNDRHYT YYAPLPGVLEVWRDDKLLLRRGVNAGMGELAYQSLPTGIYQARVVIKGLNDELFSDQSLLLVNDGPTLEGVSTHLSVGRL DDHAYYGNAWMGELGVTVPLGDIVSLSGLTGYADREFLGTLGADIRSSNLTLSLLQTLGSQGYQKSDLVATYYPLSLQYT RERYRQRERPFVRTLPGAVEPDDVLQPSLIPDYLDQHPGMSANRENLLANYSVALHQDHTLQLGYQFFREQSQRSQYYTL SLFSRLPWNINLTASLNYARNDLWSASVGLSVPIGSLQASSYYSQQNAGRWRSQNTLNYSQSLAEAWLVNLQGGQQFSDN GAQTTFSAGAQYRGSADVRAQVYLASDQSGAAGSLDVQSSQLIASDGISFQRPDALSQQAFLRLPAEEKGAVSVALKEQS SGMTRYYTEGGGKIIALPAYSRYQLDERLIGGSRVFDNHQSRYQQQIDLLPGRLVDTTRAVLPVRNQAIRVRQQGNGVDQ LRCEGAGCIGVQRIQSGLFMLQLHPTGAITLLSEGRPCASLSSALQLPADQLPIVECKSE >Mature_860_residues MKMKMTMTSFQMSIIKILPVTGLLAGAAWAAPSLPTDTLASNHRGLAQGAVATQTLAHNDMTLAQNNATLAMAHGMSLAS GVPLARSRYGKILTPSPMAITLVIPQVDEARFEGELALDSVRIDDSAAVAAFLSRAGLSQKQADEVARQFAAGVSHDSRC KGSRATCVLSSEGMAVVIDYYARQVRLFFAPAYFARETRQVEYLQGDEGKKVLVNHASLFANRYANQGNSLYARDYGLWG LPGGFLKYDAYVTDRDYGINALNYVYQYQWFKAQLGAVDNSYDFNPSAQRSLFKNSQMTALLLGNSAEMQVRSQNDRHYT YYAPLPGVLEVWRDDKLLLRRGVNAGMGELAYQSLPTGIYQARVVIKGLNDELFSDQSLLLVNDGPTLEGVSTHLSVGRL DDHAYYGNAWMGELGVTVPLGDIVSLSGLTGYADREFLGTLGADIRSSNLTLSLLQTLGSQGYQKSDLVATYYPLSLQYT RERYRQRERPFVRTLPGAVEPDDVLQPSLIPDYLDQHPGMSANRENLLANYSVALHQDHTLQLGYQFFREQSQRSQYYTL SLFSRLPWNINLTASLNYARNDLWSASVGLSVPIGSLQASSYYSQQNAGRWRSQNTLNYSQSLAEAWLVNLQGGQQFSDN GAQTTFSAGAQYRGSADVRAQVYLASDQSGAAGSLDVQSSQLIASDGISFQRPDALSQQAFLRLPAEEKGAVSVALKEQS SGMTRYYTEGGGKIIALPAYSRYQLDERLIGGSRVFDNHQSRYQQQIDLLPGRLVDTTRAVLPVRNQAIRVRQQGNGVDQ LRCEGAGCIGVQRIQSGLFMLQLHPTGAITLLSEGRPCASLSSALQLPADQLPIVECKSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 94376; Mature: 94376
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKMKMTMTSFQMSIIKILPVTGLLAGAAWAAPSLPTDTLASNHRGLAQGAVATQTLAHND CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHCHHHHHHHCCCC MTLAQNNATLAMAHGMSLASGVPLARSRYGKILTPSPMAITLVIPQVDEARFEGELALDS EEEEECCCEEEEECCCHHHCCCCHHHHHCCCEECCCCEEEEEEECCCCCHHCCCCEEEEE VRIDDSAAVAAFLSRAGLSQKQADEVARQFAAGVSHDSRCKGSRATCVLSSEGMAVVIDY EEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEH YARQVRLFFAPAYFARETRQVEYLQGDEGKKVLVNHASLFANRYANQGNSLYARDYGLWG HHHEEEEEEEHHHHHHHCCEEEEEECCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCC LPGGFLKYDAYVTDRDYGINALNYVYQYQWFKAQLGAVDNSYDFNPSAQRSLFKNSQMTA CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEE LLLGNSAEMQVRSQNDRHYTYYAPLPGVLEVWRDDKLLLRRGVNAGMGELAYQSLPTGIY EEECCCCEEEEECCCCCEEEEECCCCHHHHHHCCCHHHHHCCCCCCHHHHHHHHCCCCHH QARVVIKGLNDELFSDQSLLLVNDGPTLEGVSTHLSVGRLDDHAYYGNAWMGELGVTVPL EEEEEEECCCHHHCCCCCEEEEECCCCCCCCHHEEEECCCCCCEEECCCEECCCCCEEEC GDIVSLSGLTGYADREFLGTLGADIRSSNLTLSLLQTLGSQGYQKSDLVATYYPLSLQYT CCHHEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCEEHHH RERYRQRERPFVRTLPGAVEPDDVLQPSLIPDYLDQHPGMSANRENLLANYSVALHQDHT HHHHHHHCCCHHHHCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCHHHEEEEEEEEECCCH LQLGYQFFREQSQRSQYYTLSLFSRLPWNINLTASLNYARNDLWSASVGLSVPIGSLQAS HHHHHHHHHHHHHCCCEEEEEEHHHCCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCHH SYYSQQNAGRWRSQNTLNYSQSLAEAWLVNLQGGQQFSDNGAQTTFSAGAQYRGSADVRA HHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCCCEECCCCCCEEECCCCCCCCCCCCEE QVYLASDQSGAAGSLDVQSSQLIASDGISFQRPDALSQQAFLRLPAEEKGAVSVALKEQS EEEEECCCCCCCCEEECCCCCEEECCCCCCCCCCHHCCHHHEECCCCCCCCEEEEEECCC SGMTRYYTEGGGKIIALPAYSRYQLDERLIGGSRVFDNHQSRYQQQIDLLPGRLVDTTRA CCCEEEEECCCCEEEEECCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCCHHHHHHH VLPVRNQAIRVRQQGNGVDQLRCEGAGCIGVQRIQSGLFMLQLHPTGAITLLSEGRPCAS HHCCCCCEEEEEECCCCCCEEEECCCCCEEHHHHHCCEEEEEECCCCEEEEEECCCCHHH LSSALQLPADQLPIVECKSE HHHHHCCCCCCCCCEEECCC >Mature Secondary Structure MKMKMTMTSFQMSIIKILPVTGLLAGAAWAAPSLPTDTLASNHRGLAQGAVATQTLAHND CCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHCHHHHHHHCCCC MTLAQNNATLAMAHGMSLASGVPLARSRYGKILTPSPMAITLVIPQVDEARFEGELALDS EEEEECCCEEEEECCCHHHCCCCHHHHHCCCEECCCCEEEEEEECCCCCHHCCCCEEEEE VRIDDSAAVAAFLSRAGLSQKQADEVARQFAAGVSHDSRCKGSRATCVLSSEGMAVVIDY EEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEH YARQVRLFFAPAYFARETRQVEYLQGDEGKKVLVNHASLFANRYANQGNSLYARDYGLWG HHHEEEEEEEHHHHHHHCCEEEEEECCCCCEEEEHHHHHHHHHHHCCCCEEEEECCCCCC LPGGFLKYDAYVTDRDYGINALNYVYQYQWFKAQLGAVDNSYDFNPSAQRSLFKNSQMTA CCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCEEE LLLGNSAEMQVRSQNDRHYTYYAPLPGVLEVWRDDKLLLRRGVNAGMGELAYQSLPTGIY EEECCCCEEEEECCCCCEEEEECCCCHHHHHHCCCHHHHHCCCCCCHHHHHHHHCCCCHH QARVVIKGLNDELFSDQSLLLVNDGPTLEGVSTHLSVGRLDDHAYYGNAWMGELGVTVPL EEEEEEECCCHHHCCCCCEEEEECCCCCCCCHHEEEECCCCCCEEECCCEECCCCCEEEC GDIVSLSGLTGYADREFLGTLGADIRSSNLTLSLLQTLGSQGYQKSDLVATYYPLSLQYT CCHHEECCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCEEHHH RERYRQRERPFVRTLPGAVEPDDVLQPSLIPDYLDQHPGMSANRENLLANYSVALHQDHT HHHHHHHCCCHHHHCCCCCCCHHCCCCCCCHHHHHHCCCCCCCCHHHEEEEEEEEECCCH LQLGYQFFREQSQRSQYYTLSLFSRLPWNINLTASLNYARNDLWSASVGLSVPIGSLQAS HHHHHHHHHHHHHCCCEEEEEEHHHCCCCEEEEEECCHHHCCCCCCCCCCCCCCCCCCHH SYYSQQNAGRWRSQNTLNYSQSLAEAWLVNLQGGQQFSDNGAQTTFSAGAQYRGSADVRA HHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCCCEECCCCCCEEECCCCCCCCCCCCEE QVYLASDQSGAAGSLDVQSSQLIASDGISFQRPDALSQQAFLRLPAEEKGAVSVALKEQS EEEEECCCCCCCCEEECCCCCEEECCCCCCCCCCHHCCHHHEECCCCCCCCEEEEEECCC SGMTRYYTEGGGKIIALPAYSRYQLDERLIGGSRVFDNHQSRYQQQIDLLPGRLVDTTRA CCCEEEEECCCCEEEEECCCCHHHHHHHHCCCCHHHCCHHHHHHHHHHCCCCCHHHHHHH VLPVRNQAIRVRQQGNGVDQLRCEGAGCIGVQRIQSGLFMLQLHPTGAITLLSEGRPCAS HHCCCCCEEEEEECCCCCCEEEECCCCCEEHHHHHCCEEEEEECCCCEEEEEECCCCHHH LSSALQLPADQLPIVECKSE HHHHHCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA