| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is 238919395
Identifier: 238919395
GI number: 238919395
Start: 1462861
End: 1463337
Strand: Reverse
Name: 238919395
Synonym: NT01EI_1489
Alternate gene names: NA
Gene position: 1463337-1462861 (Counterclockwise)
Preceding gene: 238919396
Following gene: 238919394
Centisome position: 38.38
GC content: 52.62
Gene sequence:
>477_bases ATGGATATTTTTGAAGAGTCCCTATCACCCCTCGGGGTAAGCGTGGTGTTCGATGAGAACAACCTGTTCTCCTGTGAAAT AAACCAAGAGTCAACTGAAGGCAGAGGCAGAGCGCCATGGCAGCTCACTGTATATCGTGACCAAGATGATATCAGCCTTG CTATCTCCATCGTGCTTGGAACGCCCCTTCCTGATAATCCCACTCCTGATTTCATCACCTTGCTGGGAGAGCAGGCTATC GAGCCCCTGCGTGGCGGGGTGGGGATCGGTATCTATCCTGGAACCTCTCAACTTGCCGTTTACCAACGGGTACAACTCTC TGGCAAACCAACCGGTATTGTCATGGAGGCCATTAAAAGCCTGTTTGCTATTGCCGAGGAGTGGGAAAGTCTACTCTCCC CGGAACGCCAGAAGACCCCCATCGAACACACCCCCCCCCAGAATCAGCAAGGGCATTTTTACAGGCTCAAGCCGTGA
Upstream 100 bases:
>100_bases TATGATAGATTTTGTGGTTAACTAGGATAAACAGTCCCGACTCAGGAAAGTGCGAACGAGTAGATATCGACATAAACCAT TAATGAATGGCATAAATATC
Downstream 100 bases:
>100_bases TCGCGCCTCCGGACATCGGTAACCATCCCTCTTTCATCTACCTGTCCAATATTTTTACTGCAAAATCAGTACCATTATCG GTTTCCAGCAACTGCGGTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 158; Mature: 158
Protein sequence:
>158_residues MDIFEESLSPLGVSVVFDENNLFSCEINQESTEGRGRAPWQLTVYRDQDDISLAISIVLGTPLPDNPTPDFITLLGEQAI EPLRGGVGIGIYPGTSQLAVYQRVQLSGKPTGIVMEAIKSLFAIAEEWESLLSPERQKTPIEHTPPQNQQGHFYRLKP
Sequences:
>Translated_158_residues MDIFEESLSPLGVSVVFDENNLFSCEINQESTEGRGRAPWQLTVYRDQDDISLAISIVLGTPLPDNPTPDFITLLGEQAI EPLRGGVGIGIYPGTSQLAVYQRVQLSGKPTGIVMEAIKSLFAIAEEWESLLSPERQKTPIEHTPPQNQQGHFYRLKP >Mature_158_residues MDIFEESLSPLGVSVVFDENNLFSCEINQESTEGRGRAPWQLTVYRDQDDISLAISIVLGTPLPDNPTPDFITLLGEQAI EPLRGGVGIGIYPGTSQLAVYQRVQLSGKPTGIVMEAIKSLFAIAEEWESLLSPERQKTPIEHTPPQNQQGHFYRLKP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17493; Mature: 17493
Theoretical pI: Translated: 4.26; Mature: 4.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIFEESLSPLGVSVVFDENNLFSCEINQESTEGRGRAPWQLTVYRDQDDISLAISIVLG CCCHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEC TPLPDNPTPDFITLLGEQAIEPLRGGVGIGIYPGTSQLAVYQRVQLSGKPTGIVMEAIKS CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHH LFAIAEEWESLLSPERQKTPIEHTPPQNQQGHFYRLKP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECC >Mature Secondary Structure MDIFEESLSPLGVSVVFDENNLFSCEINQESTEGRGRAPWQLTVYRDQDDISLAISIVLG CCCHHHCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEC TPLPDNPTPDFITLLGEQAIEPLRGGVGIGIYPGTSQLAVYQRVQLSGKPTGIVMEAIKS CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHH LFAIAEEWESLLSPERQKTPIEHTPPQNQQGHFYRLKP HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA