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The map label for this gene is flhD

Identifier: 238919358

GI number: 238919358

Start: 1429517

End: 1429864

Strand: Direct

Name: flhD

Synonym: NT01EI_1452

Alternate gene names: 238919358

Gene position: 1429517-1429864 (Clockwise)

Preceding gene: 238919357

Following gene: 238919359

Centisome position: 37.5

GC content: 47.13

Gene sequence:

>348_bases
ATGAGTACCTCGGAAATACTTAAACATATTTATGACATCAACTTGTCATATTTGTTATTAGCACAGCGATTAATTCATGA
CGACAAAGCCTCTGCCATGTTTCGGCTGGGGATTGACGCAGACATGGCGGAAACCTTGGTTCAGCTGACGCTGCCACAGA
TGGTAAAACTGGCTGAAACCAATCAGTTGGTGTGCCAGTTTCGCTTTGAAGATCATCAGACCATCCAACGCTTGACCCAA
GAGTCACGTGTGGACGATCTGCAACAGATTCATACCGGAATTCTTTTGTCCAGCCACCTGCTTCAGCAGCTGTCGGCAGA
TGGAAATGATTCGGGGAAACGGGGCTGA

Upstream 100 bases:

>100_bases
GTTGAGCGGTTATCAGGTACCTCATTCTCCTGCGCCTCGCGCAGTTATAGTAAAGGTACGTTTCATTGTGTTGGCCGATT
GAGTCAAGCAGGGTGAGATA

Downstream 100 bases:

>100_bases
AATGAGCGAAAAAAGCATCATTCAGGAAGCACGCGACATACAGCTGGCGATGGAACTTATCTCTCTGGGGGCGCGTCTGC
AGATGTTGGAGAGCGAAACC

Product: transcriptional activator FlhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 114

Protein sequence:

>115_residues
MSTSEILKHIYDINLSYLLLAQRLIHDDKASAMFRLGIDADMAETLVQLTLPQMVKLAETNQLVCQFRFEDHQTIQRLTQ
ESRVDDLQQIHTGILLSSHLLQQLSADGNDSGKRG

Sequences:

>Translated_115_residues
MSTSEILKHIYDINLSYLLLAQRLIHDDKASAMFRLGIDADMAETLVQLTLPQMVKLAETNQLVCQFRFEDHQTIQRLTQ
ESRVDDLQQIHTGILLSSHLLQQLSADGNDSGKRG
>Mature_114_residues
STSEILKHIYDINLSYLLLAQRLIHDDKASAMFRLGIDADMAETLVQLTLPQMVKLAETNQLVCQFRFEDHQTIQRLTQE
SRVDDLQQIHTGILLSSHLLQQLSADGNDSGKRG

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems. Together with FlhC it acts as an activator of class 2 flagellar genes

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family

Homologues:

Organism=Escherichia coli, GI145693151, Length=101, Percent_Identity=81.1881188118812, Blast_Score=166, Evalue=5e-43,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLHD_EDWI9 (C5BDU0)

Other databases:

- EMBL:   CP001600
- RefSeq:   YP_002932873.1
- GeneID:   7962265
- GenomeReviews:   CP001600_GR
- KEGG:   eic:NT01EI_1452
- OMA:   MGTSELL
- ProtClustDB:   PRK02909
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_00725
- InterPro:   IPR007911
- ProDom:   PD015582

Pfam domain/function: PF05247 FlhD; SSF63592 Flagellar_transcriptional_act

EC number: NA

Molecular weight: Translated: 13049; Mature: 12918

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSEILKHIYDINLSYLLLAQRLIHDDKASAMFRLGIDADMAETLVQLTLPQMVKLAET
CCHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
NQLVCQFRFEDHQTIQRLTQESRVDDLQQIHTGILLSSHLLQQLSADGNDSGKRG
CHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
STSEILKHIYDINLSYLLLAQRLIHDDKASAMFRLGIDADMAETLVQLTLPQMVKLAET
CHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC
NQLVCQFRFEDHQTIQRLTQESRVDDLQQIHTGILLSSHLLQQLSADGNDSGKRG
CHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA