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The map label for this gene is dcuD [H]

Identifier: 238919282

GI number: 238919282

Start: 1360215

End: 1361576

Strand: Direct

Name: dcuD [H]

Synonym: NT01EI_1372

Alternate gene names: 238919282

Gene position: 1360215-1361576 (Clockwise)

Preceding gene: 238919281

Following gene: 238919283

Centisome position: 35.68

GC content: 58.44

Gene sequence:

>1362_bases
ATGCTGACCCTGTTTATTGCCGTCCTCGTCGTCATTCTCGTGATATACGGCCTGTTGAAAGGGGCTGCGCCCCAGGCTGT
TTTGCTGTTGGGGGGCGTAGCCCTGCTGTTTTTCACCGCGTGGCTACGGGATACGCCGCTGATGGTGGCCGAACACAGCG
CTAACTGGCGCTATTTTGATATCTTTTACCTGATTGGCAGCGTAATGAGTAACCGGTTGGCCGGGATTGGGCTGACCATC
ATGACGATTTCGGGCTTTGCCCGCTATATGGAGCACGTAGGGGCCAGCCATGCGCTGTTCGCCATTTTTGAGCGACCGCT
TAGGCGCATTCGCTCCCCCTATCTGCTGCTGGTACTGGGCTTCCTTCTCTCACAGGTTTTGGTGCTGTTTATTCCCAGCC
ACTCCGGTCTGGCGCTGCTGCTGATGGTCACGCTGTACCCTATTTTTATTCGTTGCGGAGTCAGCAAACTGTCGGCGCTG
GGGGTGATCGGCTGCGCCCAGTTTATCGATCATGGTCCCAGCGGGCCGGTAATTTTGGCGGCGGAACTGTCGGGGATGGA
TCCGGTTATCTATTTTGTGCATCATCAGCTGCCCGTTACCCTGCCGATTATTGCCGCCGTGGCCCTGAGCCATTATGTGG
TGCAGCGCTGGTGGGATCGGCGCGAAACGGCAGCGCCGCTGACGGAGGAGCGTGCAGCAGAGGCGGCATCGCTGCCGTCG
CGGCCACCGCTCTGCTATGCCCTGCTACCGGTATTGCCTCTGGCGTTGATCATGGCCTTTAGCCCGCTGTTTGCTTCGAC
GGTGCGCATTTCTATCGTGGCGGCGATGCTGATCAGCATTCTGACCGCCATGCTGTTCGAGCTGGTTCGCCTGCGGCAGC
CCAAACAGGTGCTGGGCAGTCTGATGATCTTTATTGACGGCATGGGCAAGGCCTTTGTACTGGTCGTCTCGCTGATTATC
TGCGGTGAGGTCTTTGCCAATGGGCTGATCAAAATTGGTGCGATCGATGCCCTGACCGACGGTATGCATCATGCGGGCTT
TGGCGTGGGTACCATGATGGTGATCATGAGCCTGATGCTGGCGCTGGCAGCGTTTTTGATGGGTTCCGGTAATGCGGCGT
TTTTTCCGCTGGCGGGGATTGCGCCGGATATTGCCGGCTCGCTGAATATCGAGGTGATCACCCTGATGCTGCCAATGCAG
ATCATGACCAGCTTTGGCCGCACCGTATCGCCGATCACCGCCGCTATCGTTGCCATTGCCGCTATCGCGAACGTTTCGCC
GCTGCAGGTGGTGAAGCGTACCGCGATCCCCATGGCCGTGGCCGCCGCCGTCAATCTGGCGCTGAATCTGCTGTGGCTGT
AG

Upstream 100 bases:

>100_bases
ACACTGCCGGGATAGTCTGTTTATCCTTTCCCCTTATCCCCCTTTCTTGCTACGACGCCTGTTTTTTCCACCTCTATCGG
TCATTAAGGAGAAACGCGTC

Downstream 100 bases:

>100_bases
GCGGTGCGGGACAAAACCTGCGCAATAGCCGGACGGAGGCCCGCGCTACGTGGGCCAATATAATAAAGATGCCTCATCCA
GGCGTATTCCTTAATGGCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MLTLFIAVLVVILVIYGLLKGAAPQAVLLLGGVALLFFTAWLRDTPLMVAEHSANWRYFDIFYLIGSVMSNRLAGIGLTI
MTISGFARYMEHVGASHALFAIFERPLRRIRSPYLLLVLGFLLSQVLVLFIPSHSGLALLLMVTLYPIFIRCGVSKLSAL
GVIGCAQFIDHGPSGPVILAAELSGMDPVIYFVHHQLPVTLPIIAAVALSHYVVQRWWDRRETAAPLTEERAAEAASLPS
RPPLCYALLPVLPLALIMAFSPLFASTVRISIVAAMLISILTAMLFELVRLRQPKQVLGSLMIFIDGMGKAFVLVVSLII
CGEVFANGLIKIGAIDALTDGMHHAGFGVGTMMVIMSLMLALAAFLMGSGNAAFFPLAGIAPDIAGSLNIEVITLMLPMQ
IMTSFGRTVSPITAAIVAIAAIANVSPLQVVKRTAIPMAVAAAVNLALNLLWL

Sequences:

>Translated_453_residues
MLTLFIAVLVVILVIYGLLKGAAPQAVLLLGGVALLFFTAWLRDTPLMVAEHSANWRYFDIFYLIGSVMSNRLAGIGLTI
MTISGFARYMEHVGASHALFAIFERPLRRIRSPYLLLVLGFLLSQVLVLFIPSHSGLALLLMVTLYPIFIRCGVSKLSAL
GVIGCAQFIDHGPSGPVILAAELSGMDPVIYFVHHQLPVTLPIIAAVALSHYVVQRWWDRRETAAPLTEERAAEAASLPS
RPPLCYALLPVLPLALIMAFSPLFASTVRISIVAAMLISILTAMLFELVRLRQPKQVLGSLMIFIDGMGKAFVLVVSLII
CGEVFANGLIKIGAIDALTDGMHHAGFGVGTMMVIMSLMLALAAFLMGSGNAAFFPLAGIAPDIAGSLNIEVITLMLPMQ
IMTSFGRTVSPITAAIVAIAAIANVSPLQVVKRTAIPMAVAAAVNLALNLLWL
>Mature_453_residues
MLTLFIAVLVVILVIYGLLKGAAPQAVLLLGGVALLFFTAWLRDTPLMVAEHSANWRYFDIFYLIGSVMSNRLAGIGLTI
MTISGFARYMEHVGASHALFAIFERPLRRIRSPYLLLVLGFLLSQVLVLFIPSHSGLALLLMVTLYPIFIRCGVSKLSAL
GVIGCAQFIDHGPSGPVILAAELSGMDPVIYFVHHQLPVTLPIIAAVALSHYVVQRWWDRRETAAPLTEERAAEAASLPS
RPPLCYALLPVLPLALIMAFSPLFASTVRISIVAAMLISILTAMLFELVRLRQPKQVLGSLMIFIDGMGKAFVLVVSLII
CGEVFANGLIKIGAIDALTDGMHHAGFGVGTMMVIMSLMLALAAFLMGSGNAAFFPLAGIAPDIAGSLNIEVITLMLPMQ
IMTSFGRTVSPITAAIVAIAAIANVSPLQVVKRTAIPMAVAAAVNLALNLLWL

Specific function: May have a role in the transport of dicarboxylates from the periplasm across the inner membrane. Seems not to be essential for growth. It is likely to be a cryptic gene, as no or low expression has been found under a number of growth conditions and when t

COG id: COG3069

COG function: function code C; C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuC/dcuD transporter (TC 2.A.61) family [H]

Homologues:

Organism=Escherichia coli, GI1789622, Length=452, Percent_Identity=41.3716814159292, Blast_Score=340, Evalue=1e-94,
Organism=Escherichia coli, GI1786839, Length=389, Percent_Identity=31.1053984575836, Blast_Score=174, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018385
- InterPro:   IPR004669 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 48550; Mature: 48550

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLFIAVLVVILVIYGLLKGAAPQAVLLLGGVALLFFTAWLRDTPLMVAEHSANWRYFD
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
IFYLIGSVMSNRLAGIGLTIMTISGFARYMEHVGASHALFAIFERPLRRIRSPYLLLVLG
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
FLLSQVLVLFIPSHSGLALLLMVTLYPIFIRCGVSKLSALGVIGCAQFIDHGPSGPVILA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
AELSGMDPVIYFVHHQLPVTLPIIAAVALSHYVVQRWWDRRETAAPLTEERAAEAASLPS
EECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
RPPLCYALLPVLPLALIMAFSPLFASTVRISIVAAMLISILTAMLFELVRLRQPKQVLGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LMIFIDGMGKAFVLVVSLIICGEVFANGLIKIGAIDALTDGMHHAGFGVGTMMVIMSLML
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHCCHHHCCCCHHHHHHHHHHHH
ALAAFLMGSGNAAFFPLAGIAPDIAGSLNIEVITLMLPMQIMTSFGRTVSPITAAIVAIA
HHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AIANVSPLQVVKRTAIPMAVAAAVNLALNLLWL
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLTLFIAVLVVILVIYGLLKGAAPQAVLLLGGVALLFFTAWLRDTPLMVAEHSANWRYFD
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
IFYLIGSVMSNRLAGIGLTIMTISGFARYMEHVGASHALFAIFERPLRRIRSPYLLLVLG
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
FLLSQVLVLFIPSHSGLALLLMVTLYPIFIRCGVSKLSALGVIGCAQFIDHGPSGPVILA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
AELSGMDPVIYFVHHQLPVTLPIIAAVALSHYVVQRWWDRRETAAPLTEERAAEAASLPS
EECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
RPPLCYALLPVLPLALIMAFSPLFASTVRISIVAAMLISILTAMLFELVRLRQPKQVLGS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LMIFIDGMGKAFVLVVSLIICGEVFANGLIKIGAIDALTDGMHHAGFGVGTMMVIMSLML
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEECCHHHHHCCHHHCCCCHHHHHHHHHHHH
ALAAFLMGSGNAAFFPLAGIAPDIAGSLNIEVITLMLPMQIMTSFGRTVSPITAAIVAIA
HHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
AIANVSPLQVVKRTAIPMAVAAAVNLALNLLWL
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]