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The map label for this gene is flgD [H]

Identifier: 238919258

GI number: 238919258

Start: 1334129

End: 1334863

Strand: Direct

Name: flgD [H]

Synonym: NT01EI_1348

Alternate gene names: 238919258

Gene position: 1334129-1334863 (Clockwise)

Preceding gene: 238919257

Following gene: 238919259

Centisome position: 35.0

GC content: 56.6

Gene sequence:

>735_bases
ATGGCCATTTCGGTATCGCTTAATGATCCGGTAGATACCAGCTCGCCGGTCAATGCCAACAGTAAGACCGGGCTGGTTGC
GGATAACGGAAAGGATCTTCAGAACAGCTTCCTGACTCTGCTGGTGGCGCAGTTGCGTAATCAGGATCCGACCAATCCGT
TAAAGAATAATGAGCTGACCACTCAGCTGGCACAAATCAGCACCGTCAGCGGGATTGAGAAGCTGAACACCACCCTGGGC
AGCATCTCCGGGCAGATCAACAGCAATCAGTCCATTCAGGCCACCAGCCTGATTGGCCATGGTGTCATGATCCCCGGGAA
AACCATTCTGGTCGGTAAAGAAAAGGATGGCGGCCCGGTCAGTACCACGCCCTTTGGCTTTGAGCTGGAAAGCGGGGCAC
AAAGCGTGGTGGTAACCATCAGCGATCGTACCGGTAAGGTGGTTAAGCAGATAGATACAGGCGGCCACCGTGCCGGTGTC
TATAGCTACACCTGGGACGGTACCGGGACGGATGGCCTTGCCGTGCCGGACGGTGCGTATACCTTCAGCGTCAATGCCAG
CAATCAGGGGCAACAGATGGTGGCCCAGCCGCTGCATTTTGCCACGGTGAACGGGATCACCAAAAAGCGGCAACGGGGCG
TTGCTGGAACTGGGACTGTCCGGTACAGCCACACTGGCCGACGTACGCCAGATCTTATAATGGCGGCCGGTATGCCGGCC
TTTTCCGCATTCTAG

Upstream 100 bases:

>100_bases
CCGCCTCCCGGAGCTATCAGGCTAACGTTGAGGTATTAAATACTACCAAGTCATTGATGATGAAGACATTAACCCTTGGA
CAATAATTACGGGAGGCATG

Downstream 100 bases:

>100_bases
ATACAGGATTTTACAATGGGATTTTCTCAGGCAATCAGCGGTATGAATGCCGCTTCCACCCAACTCGATGTGATCGGCAA
CAACATTGCCAACTCACAGA

Product: basal-body rod modification protein FlgD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MAISVSLNDPVDTSSPVNANSKTGLVADNGKDLQNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTVSGIEKLNTTLG
SISGQINSNQSIQATSLIGHGVMIPGKTILVGKEKDGGPVSTTPFGFELESGAQSVVVTISDRTGKVVKQIDTGGHRAGV
YSYTWDGTGTDGLAVPDGAYTFSVNASNQGQQMVAQPLHFATVNGITKKRQRGVAGTGTVRYSHTGRRTPDLIMAAGMPA
FSAF

Sequences:

>Translated_244_residues
MAISVSLNDPVDTSSPVNANSKTGLVADNGKDLQNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTVSGIEKLNTTLG
SISGQINSNQSIQATSLIGHGVMIPGKTILVGKEKDGGPVSTTPFGFELESGAQSVVVTISDRTGKVVKQIDTGGHRAGV
YSYTWDGTGTDGLAVPDGAYTFSVNASNQGQQMVAQPLHFATVNGITKKRQRGVAGTGTVRYSHTGRRTPDLIMAAGMPA
FSAF
>Mature_243_residues
AISVSLNDPVDTSSPVNANSKTGLVADNGKDLQNSFLTLLVAQLRNQDPTNPLKNNELTTQLAQISTVSGIEKLNTTLGS
ISGQINSNQSIQATSLIGHGVMIPGKTILVGKEKDGGPVSTTPFGFELESGAQSVVVTISDRTGKVVKQIDTGGHRAGVY
SYTWDGTGTDGLAVPDGAYTFSVNASNQGQQMVAQPLHFATVNGITKKRQRGVAGTGTVRYSHTGRRTPDLIMAAGMPAF
SAF

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=178, Percent_Identity=64.6067415730337, Blast_Score=235, Evalue=2e-63,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 25491; Mature: 25360

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISVSLNDPVDTSSPVNANSKTGLVADNGKDLQNSFLTLLVAQLRNQDPTNPLKNNELT
CEEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TQLAQISTVSGIEKLNTTLGSISGQINSNQSIQATSLIGHGVMIPGKTILVGKEKDGGPV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEECCCCEEEEECCCCCCCC
STTPFGFELESGAQSVVVTISDRTGKVVKQIDTGGHRAGVYSYTWDGTGTDGLAVPDGAY
CCCCCCEEECCCCCEEEEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCE
TFSVNASNQGQQMVAQPLHFATVNGITKKRQRGVAGTGTVRYSHTGRRTPDLIMAAGMPA
EEEEECCCCCHHHHHCCHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCH
FSAF
HHCC
>Mature Secondary Structure 
AISVSLNDPVDTSSPVNANSKTGLVADNGKDLQNSFLTLLVAQLRNQDPTNPLKNNELT
EEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
TQLAQISTVSGIEKLNTTLGSISGQINSNQSIQATSLIGHGVMIPGKTILVGKEKDGGPV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEECCCCEEEEECCCCCCCC
STTPFGFELESGAQSVVVTISDRTGKVVKQIDTGGHRAGVYSYTWDGTGTDGLAVPDGAY
CCCCCCEEECCCCCEEEEEEECCCCHHHHHHCCCCCCCCEEEEECCCCCCCCEECCCCCE
TFSVNASNQGQQMVAQPLHFATVNGITKKRQRGVAGTGTVRYSHTGRRTPDLIMAAGMPA
EEEEECCCCCHHHHHCCHHHHHHCCHHHHHHCCCCCCCEEEECCCCCCCCCEEEECCCCH
FSAF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]