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The map label for this gene is ybdO [H]

Identifier: 238919092

GI number: 238919092

Start: 1154763

End: 1155707

Strand: Direct

Name: ybdO [H]

Synonym: NT01EI_1162

Alternate gene names: 238919092

Gene position: 1154763-1155707 (Clockwise)

Preceding gene: 238919089

Following gene: 238919093

Centisome position: 30.29

GC content: 58.2

Gene sequence:

>945_bases
ATGGAGCGTTCTAATCACAGTAATTTATTGCATTTAAAGGGGTTCGATCTCAATCTGCTGACTGTATTTGAGATGGTGTT
TTTACACAATAGTGTTAGCCGCGCGGCGGCGGCGATGGGCACCACGCCATCGGCGGTGAGTCAGTCACTGCAAAAGCTGC
GTCAGCACTTTGACGATCCGCTATTTATCCGCGCAGGCAAGGGGATTTCACCAACGGCGCTGGGCGTTTGCCTGCATGAT
CAGATCGCCCAGGGGCTGTCGCTGATTGAAAATACCCTCAATGCGACGCTTTCCGCCAAGCAGCGTCGCAAGTTTGTCGT
TTTCGCCCCCTGCTGCGTGGCGCTACAGGTGCTGCCCGCTGCCGTGAGCGCCCTTGAGCGTCTTGGCGTCGGATATGAGC
TGCTGCACTACAGTGAGTATGCGGATTATCATCCGCATACCATTGCTGAGCAGCTGCTGAATTTTCGCAAGGCCGACGTG
GTGTTCAGCACGACGCCGGTGACGGCGCATGCGGTGCACTGCCTGCCGTTTGCGAACGAACCACTGGCGCTGGTATGCCG
CGATGGGCATCCGCGCCTCGGGGAGGCGTGCAGCGAGGTTCAACTGAGCGGAGAGCGGTTTGTGATCCTGCAGCGCGCCC
ATAGCGACGGGGATCGCTTTGCATTTTTGCACGGTGGTCGGGTGGTACTGCGCTCGGACTCCTTTATCTCGATTCTGGGG
GTGGTCAGCCACAGCGATCTGCTGACGGTTTTGCCGCGGGAGGTCGCACTGCGCTACGGTGCATCCTTTAAACTGCGGGT
GGTGGAGACGGCATTTGCGATCCCGCCGATCTCACTCTATCTTACCTATAACAAGCTTTCCCTGCGCAACCCCGAGTTCC
GTAATCTGCTTGACGTGCTGATGGACACCGTCTCCCTGGGGGGCATGGTGCCGCTGACGGCATGA

Upstream 100 bases:

>100_bases
TGATAACTACACCTATTGAGTTATTAGTGTGAATGTATAAGCTGTCCTGAAATGGTTAATATGAATAAAATCGCTTAAAA
CATAAGGATGGTGTATTTAT

Downstream 100 bases:

>100_bases
GCCGACACGTTCCTCTCGCGGTGCCAGCCCGTGATGAGGAGCCTGCCCCGCAGGCCTATTTTTAGCTGAACGGATTCAGT
TATTCCTGATTATTTCTGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MERSNHSNLLHLKGFDLNLLTVFEMVFLHNSVSRAAAAMGTTPSAVSQSLQKLRQHFDDPLFIRAGKGISPTALGVCLHD
QIAQGLSLIENTLNATLSAKQRRKFVVFAPCCVALQVLPAAVSALERLGVGYELLHYSEYADYHPHTIAEQLLNFRKADV
VFSTTPVTAHAVHCLPFANEPLALVCRDGHPRLGEACSEVQLSGERFVILQRAHSDGDRFAFLHGGRVVLRSDSFISILG
VVSHSDLLTVLPREVALRYGASFKLRVVETAFAIPPISLYLTYNKLSLRNPEFRNLLDVLMDTVSLGGMVPLTA

Sequences:

>Translated_314_residues
MERSNHSNLLHLKGFDLNLLTVFEMVFLHNSVSRAAAAMGTTPSAVSQSLQKLRQHFDDPLFIRAGKGISPTALGVCLHD
QIAQGLSLIENTLNATLSAKQRRKFVVFAPCCVALQVLPAAVSALERLGVGYELLHYSEYADYHPHTIAEQLLNFRKADV
VFSTTPVTAHAVHCLPFANEPLALVCRDGHPRLGEACSEVQLSGERFVILQRAHSDGDRFAFLHGGRVVLRSDSFISILG
VVSHSDLLTVLPREVALRYGASFKLRVVETAFAIPPISLYLTYNKLSLRNPEFRNLLDVLMDTVSLGGMVPLTA
>Mature_314_residues
MERSNHSNLLHLKGFDLNLLTVFEMVFLHNSVSRAAAAMGTTPSAVSQSLQKLRQHFDDPLFIRAGKGISPTALGVCLHD
QIAQGLSLIENTLNATLSAKQRRKFVVFAPCCVALQVLPAAVSALERLGVGYELLHYSEYADYHPHTIAEQLLNFRKADV
VFSTTPVTAHAVHCLPFANEPLALVCRDGHPRLGEACSEVQLSGERFVILQRAHSDGDRFAFLHGGRVVLRSDSFISILG
VVSHSDLLTVLPREVALRYGASFKLRVVETAFAIPPISLYLTYNKLSLRNPEFRNLLDVLMDTVSLGGMVPLTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786820, Length=308, Percent_Identity=32.7922077922078, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI87081766, Length=303, Percent_Identity=30.03300330033, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI87081684, Length=291, Percent_Identity=24.7422680412371, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1790147, Length=58, Percent_Identity=48.2758620689655, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34481; Mature: 34481

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERSNHSNLLHLKGFDLNLLTVFEMVFLHNSVSRAAAAMGTTPSAVSQSLQKLRQHFDDP
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
LFIRAGKGISPTALGVCLHDQIAQGLSLIENTLNATLSAKQRRKFVVFAPCCVALQVLPA
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
AVSALERLGVGYELLHYSEYADYHPHTIAEQLLNFRKADVVFSTTPVTAHAVHCLPFANE
HHHHHHHHCCCCEEEEHHHCCCCCCHHHHHHHHCCHHHCEEEECCCCHHHEEEEECCCCC
PLALVCRDGHPRLGEACSEVQLSGERFVILQRAHSDGDRFAFLHGGRVVLRSDSFISILG
CEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCEEEEECCCCEEEHH
VVSHSDLLTVLPREVALRYGASFKLRVVETAFAIPPISLYLTYNKLSLRNPEFRNLLDVL
HHCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCEEEEEEEEECCCCCCHHHHHHHHH
MDTVSLGGMVPLTA
HHHHHCCCEEECCC
>Mature Secondary Structure
MERSNHSNLLHLKGFDLNLLTVFEMVFLHNSVSRAAAAMGTTPSAVSQSLQKLRQHFDDP
CCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
LFIRAGKGISPTALGVCLHDQIAQGLSLIENTLNATLSAKQRRKFVVFAPCCVALQVLPA
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHH
AVSALERLGVGYELLHYSEYADYHPHTIAEQLLNFRKADVVFSTTPVTAHAVHCLPFANE
HHHHHHHHCCCCEEEEHHHCCCCCCHHHHHHHHCCHHHCEEEECCCCHHHEEEEECCCCC
PLALVCRDGHPRLGEACSEVQLSGERFVILQRAHSDGDRFAFLHGGRVVLRSDSFISILG
CEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCEEEEECCCCEEEHH
VVSHSDLLTVLPREVALRYGASFKLRVVETAFAIPPISLYLTYNKLSLRNPEFRNLLDVL
HHCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCEEEEEEEEECCCCCCHHHHHHHHH
MDTVSLGGMVPLTA
HHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]