| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
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The map label for this gene is cdr [H]
Identifier: 238919080
GI number: 238919080
Start: 1144980
End: 1146635
Strand: Direct
Name: cdr [H]
Synonym: NT01EI_1149
Alternate gene names: 238919080
Gene position: 1144980-1146635 (Clockwise)
Preceding gene: 238919078
Following gene: 238919081
Centisome position: 30.03
GC content: 64.43
Gene sequence:
>1656_bases ATGAAAATCGTAATTGTCGGTGGGGTTGCCGGGGGCGCATCCGCCGCGGTCAGGGCCAGAAGGTTGTCTGAGACGGCGCA GATCATCGTGCTGGAGCGCGGGGAGTATGCCTCGTTCGCCAACTGTGGCCTACCCTATCATATCGGCGGTGAAATCCCGC AGCGCGATAGCCTGCTGTTGAAGACGCCGCAGGATTTTCGCCAGCGTTTCAATGTTGAGGTTCGGGTGCGCAACGAGGTA CTGTCCATCGATCCCCAGGGAAAAAGCGTGGAGGTGCGCGATAGCGCCAGCGGGAAGACCTACCATGAGTCCTACGATCG CCTGCTGCTGAGCAGCGGTGCCGCGCCGCTGGTGCCGCCGTTGCCGGGGGTGACAAGCCCGGGGGTATTTACCCTGCGCA GCATTAACGATATGGATGCCATTCTGGCGCACATTGCGGCGCGGGCACCGCAGCATGCCACCGTGGTCGGTGGGGGCTTT ATTGGTCTGGAGGTGGCCGAGGCACTGCATCAGCGTGGGCTGGCGGTCACCCTGCTGGAGATGGGCGCTCAGGTAATGAT GCCGGTCGATGGCGAGATGGCGGTGCCGCTGCACCAGACGCTGCGCCGCCACGGGGTGGATCTGCGCCTGCAGACGGCGC TGCAGGCGATCGCCGCCGACGGGGAGGGCATGGCCCTGACCCTGAGCGACGGCAGCGTGCTGCAGAGCGGGCTGGTGATC ATGGCTATCGGAGTGAGGCCGGAAAGTCGCCTGGCACAGGATGCCGGCCTGGCGCTGGGCGCCAGTGGCGGTATTCGGGT GGACAGCGGGATGCGCACTTCCGCGGTGGATATCTACGCGGTAGGCGACGCTGTTGAGGCGCCGCCCTTTGACGACGCCA TGCCACTACTGGTTCCGCTGGCTGGGCCGGCCAACCGCCAGGGGCGCATTGCGGCCGATACCATGCTGGGGCGTGATAGC CGCTACCGCGGTAGCCAGGCGGCGGCGGTGTGTAAGGTCTTTGATATGACCGTCGCCAGCGTGGGGCTGAGTGAGAAGCT GCTGCAGCGCCAGCAGAGGGGCTATGAGAAGGTGTATGTGCATGGGTCTGACCACGCCGGCTACTACCCCCACGCGACGC CCATCAGTCTGAAGCTGCTTTTCGATCCGGCCAACGGCGCCATTCTTGGCGCCCAGGCGATAGGCCAGGAGGGGGTCGAC AAGCGCATTGATGTGATCTCTGTCGCCCAGCGCGCCGGGCTGAAGGTGGAGGATTTGGAACATCTGGAGCTGTGCTATGC GCCGCCCTATAACAGCGCCCGGGATCTGGTCAATCAGGCGGGGATGTTGGCGGCCAACGTACGCTGCGGCGATACCGCGA TTTGCCATGTCGCCGACGTACTGCAGCGCGATCCGGCGCGCCAGTGTCTGCTGGATATCCGCACCCCGCAGGAGCTGAAG GCGCATGGAACCTATCCGCAGGCGCTGCACATCCCGCTGGATGCACTGCGCGAACGTCTGAATGAGCTACCGCGGGATAA GGAGATCCTGATCGGCTGCCAGTCGGGTCTGCGGGGTCACGTGGCCTACCGCATTCTGCTTCAGCACGGCTTCCGTGCGC GTAATCTGAGCGGGGGTTATATCACCTTTACACGGACGCTGGCGGTGCAGGACTAG
Upstream 100 bases:
>100_bases TTATTTAATATTATATATTATTATATAATGATGAGGGGAAGCTGGCAACGCCGAGCCGGGTCGCTGCCGGTCTGATAATC GGATTCGATGAGGTGAGCAG
Downstream 100 bases:
>100_bases CGCGGCGCACCGGGATTGTCCTCCCGGCGGACGATCCCGGTGTAATATGAGCGCAGGGTGAAGTAAAAAGAGTGTTTTTT CAATTAGTGTATTTACGCGA
Product: coenzyme A disulfide reductase
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 551; Mature: 551
Protein sequence:
>551_residues MKIVIVGGVAGGASAAVRARRLSETAQIIVLERGEYASFANCGLPYHIGGEIPQRDSLLLKTPQDFRQRFNVEVRVRNEV LSIDPQGKSVEVRDSASGKTYHESYDRLLLSSGAAPLVPPLPGVTSPGVFTLRSINDMDAILAHIAARAPQHATVVGGGF IGLEVAEALHQRGLAVTLLEMGAQVMMPVDGEMAVPLHQTLRRHGVDLRLQTALQAIAADGEGMALTLSDGSVLQSGLVI MAIGVRPESRLAQDAGLALGASGGIRVDSGMRTSAVDIYAVGDAVEAPPFDDAMPLLVPLAGPANRQGRIAADTMLGRDS RYRGSQAAAVCKVFDMTVASVGLSEKLLQRQQRGYEKVYVHGSDHAGYYPHATPISLKLLFDPANGAILGAQAIGQEGVD KRIDVISVAQRAGLKVEDLEHLELCYAPPYNSARDLVNQAGMLAANVRCGDTAICHVADVLQRDPARQCLLDIRTPQELK AHGTYPQALHIPLDALRERLNELPRDKEILIGCQSGLRGHVAYRILLQHGFRARNLSGGYITFTRTLAVQD
Sequences:
>Translated_551_residues MKIVIVGGVAGGASAAVRARRLSETAQIIVLERGEYASFANCGLPYHIGGEIPQRDSLLLKTPQDFRQRFNVEVRVRNEV LSIDPQGKSVEVRDSASGKTYHESYDRLLLSSGAAPLVPPLPGVTSPGVFTLRSINDMDAILAHIAARAPQHATVVGGGF IGLEVAEALHQRGLAVTLLEMGAQVMMPVDGEMAVPLHQTLRRHGVDLRLQTALQAIAADGEGMALTLSDGSVLQSGLVI MAIGVRPESRLAQDAGLALGASGGIRVDSGMRTSAVDIYAVGDAVEAPPFDDAMPLLVPLAGPANRQGRIAADTMLGRDS RYRGSQAAAVCKVFDMTVASVGLSEKLLQRQQRGYEKVYVHGSDHAGYYPHATPISLKLLFDPANGAILGAQAIGQEGVD KRIDVISVAQRAGLKVEDLEHLELCYAPPYNSARDLVNQAGMLAANVRCGDTAICHVADVLQRDPARQCLLDIRTPQELK AHGTYPQALHIPLDALRERLNELPRDKEILIGCQSGLRGHVAYRILLQHGFRARNLSGGYITFTRTLAVQD >Mature_551_residues MKIVIVGGVAGGASAAVRARRLSETAQIIVLERGEYASFANCGLPYHIGGEIPQRDSLLLKTPQDFRQRFNVEVRVRNEV LSIDPQGKSVEVRDSASGKTYHESYDRLLLSSGAAPLVPPLPGVTSPGVFTLRSINDMDAILAHIAARAPQHATVVGGGF IGLEVAEALHQRGLAVTLLEMGAQVMMPVDGEMAVPLHQTLRRHGVDLRLQTALQAIAADGEGMALTLSDGSVLQSGLVI MAIGVRPESRLAQDAGLALGASGGIRVDSGMRTSAVDIYAVGDAVEAPPFDDAMPLLVPLAGPANRQGRIAADTMLGRDS RYRGSQAAAVCKVFDMTVASVGLSEKLLQRQQRGYEKVYVHGSDHAGYYPHATPISLKLLFDPANGAILGAQAIGQEGVD KRIDVISVAQRAGLKVEDLEHLELCYAPPYNSARDLVNQAGMLAANVRCGDTAICHVADVLQRDPARQCLLDIRTPQELK AHGTYPQALHIPLDALRERLNELPRDKEILIGCQSGLRGHVAYRILLQHGFRARNLSGGYITFTRTLAVQD
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI21389617, Length=329, Percent_Identity=25.2279635258359, Blast_Score=103, Evalue=5e-22, Organism=Homo sapiens, GI65787454, Length=329, Percent_Identity=25.2279635258359, Blast_Score=103, Evalue=6e-22, Organism=Homo sapiens, GI226437568, Length=329, Percent_Identity=25.2279635258359, Blast_Score=103, Evalue=6e-22, Organism=Homo sapiens, GI91199540, Length=387, Percent_Identity=23.7726098191214, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI1789065, Length=277, Percent_Identity=31.4079422382672, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1789765, Length=285, Percent_Identity=28.0701754385965, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI1788892, Length=250, Percent_Identity=31.6, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786307, Length=333, Percent_Identity=24.6246246246246, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI87082354, Length=356, Percent_Identity=23.876404494382, Blast_Score=76, Evalue=5e-15, Organism=Escherichia coli, GI1789915, Length=330, Percent_Identity=25.4545454545455, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI87081717, Length=251, Percent_Identity=27.8884462151394, Blast_Score=66, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17559934, Length=266, Percent_Identity=24.0601503759398, Blast_Score=85, Evalue=1e-16, Organism=Drosophila melanogaster, GI24639257, Length=293, Percent_Identity=24.2320819112628, Blast_Score=86, Evalue=6e-17, Organism=Drosophila melanogaster, GI281359715, Length=293, Percent_Identity=24.2320819112628, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI281359713, Length=293, Percent_Identity=24.2320819112628, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI24639250, Length=293, Percent_Identity=24.2320819112628, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI18543267, Length=293, Percent_Identity=24.2320819112628, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI24639252, Length=293, Percent_Identity=24.2320819112628, Blast_Score=86, Evalue=8e-17, Organism=Drosophila melanogaster, GI24585130, Length=326, Percent_Identity=23.9263803680982, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI21358499, Length=373, Percent_Identity=24.3967828418231, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 58979; Mature: 58979
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIVIVGGVAGGASAAVRARRLSETAQIIVLERGEYASFANCGLPYHIGGEIPQRDSLLL CEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCEECCCCCCCCCCEEE KTPQDFRQRFNVEVRVRNEVLSIDPQGKSVEVRDSASGKTYHESYDRLLLSSGAAPLVPP ECCHHHHHHCCEEEEEECEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC LPGVTSPGVFTLRSINDMDAILAHIAARAPQHATVVGGGFIGLEVAEALHQRGLAVTLLE CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEC MGAQVMMPVDGEMAVPLHQTLRRHGVDLRLQTALQAIAADGEGMALTLSDGSVLQSGLVI CCCEEEECCCCCEECCHHHHHHHCCCCEEHHHHHHHHHCCCCCEEEEECCCHHHHCCEEE MAIGVRPESRLAQDAGLALGASGGIRVDSGMRTSAVDIYAVGDAVEAPPFDDAMPLLVPL EEECCCCHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEC AGPANRQGRIAADTMLGRDSRYRGSQAAAVCKVFDMTVASVGLSEKLLQRQQRGYEKVYV CCCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEE HGSDHAGYYPHATPISLKLLFDPANGAILGAQAIGQEGVDKRIDVISVAQRAGLKVEDLE ECCCCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCCCCCHHHHHHHHHHHCCCCHHCCC HLELCYAPPYNSARDLVNQAGMLAANVRCGDTAICHVADVLQRDPARQCLLDIRTPQELK CEEEEECCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHEECCCCHHHH AHGTYPQALHIPLDALRERLNELPRDKEILIGCQSGLRGHVAYRILLQHGFRARNLSGGY HCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCE ITFTRTLAVQD EEEEEEEEECC >Mature Secondary Structure MKIVIVGGVAGGASAAVRARRLSETAQIIVLERGEYASFANCGLPYHIGGEIPQRDSLLL CEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCHHCCCCCEECCCCCCCCCCEEE KTPQDFRQRFNVEVRVRNEVLSIDPQGKSVEVRDSASGKTYHESYDRLLLSSGAAPLVPP ECCHHHHHHCCEEEEEECEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC LPGVTSPGVFTLRSINDMDAILAHIAARAPQHATVVGGGFIGLEVAEALHQRGLAVTLLE CCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEC MGAQVMMPVDGEMAVPLHQTLRRHGVDLRLQTALQAIAADGEGMALTLSDGSVLQSGLVI CCCEEEECCCCCEECCHHHHHHHCCCCEEHHHHHHHHHCCCCCEEEEECCCHHHHCCEEE MAIGVRPESRLAQDAGLALGASGGIRVDSGMRTSAVDIYAVGDAVEAPPFDDAMPLLVPL EEECCCCHHHHHHHCCEEEECCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCCCEEEEC AGPANRQGRIAADTMLGRDSRYRGSQAAAVCKVFDMTVASVGLSEKLLQRQQRGYEKVYV CCCCCCCCCEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEE HGSDHAGYYPHATPISLKLLFDPANGAILGAQAIGQEGVDKRIDVISVAQRAGLKVEDLE ECCCCCCCCCCCCCEEEEEEEECCCCCEEEHHHHCCCCCCHHHHHHHHHHHCCCCHHCCC HLELCYAPPYNSARDLVNQAGMLAANVRCGDTAICHVADVLQRDPARQCLLDIRTPQELK CEEEEECCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHHEECCCCHHHH AHGTYPQALHIPLDALRERLNELPRDKEILIGCQSGLRGHVAYRILLQHGFRARNLSGGY HCCCCCCEEECCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCE ITFTRTLAVQD EEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA