| Definition | Edwardsiella ictaluri 93-146 chromosome, complete genome. |
|---|---|
| Accession | NC_012779 |
| Length | 3,812,315 |
Click here to switch to the map view.
The map label for this gene is dld [H]
Identifier: 238919078
GI number: 238919078
Start: 1142746
End: 1144470
Strand: Direct
Name: dld [H]
Synonym: NT01EI_1147
Alternate gene names: 238919078
Gene position: 1142746-1144470 (Clockwise)
Preceding gene: 238919076
Following gene: 238919080
Centisome position: 29.98
GC content: 62.43
Gene sequence:
>1725_bases ATGCCCTTTTCCCGCCCCGTCCCACCGGCCGAGATGCTGCTGTCCCAGCTGCGCGCCATCGCAGGTCCTTCCCGGGTGTT AAGCGATACGCGCAAAACGGCGCGTTACTGTAAAGGCTTTCGCTCCGGTCAGGGCCGCGCGCTGGCCGTGGTGTTCCCCG ACACGCTGCTGGCGATGTGGCGGATCTTCAAGGCCTGCGTCGAGGCCGATCGCATCATTCTGATGCAGGCGGCCAATACC GGCCTGACCGAAGGGTCGGCCCCCAGCGGCGATGACTACGATCGCGAGCTGGTGATCATCAATACCCTGCGCCTGGGTGG CGCCCAACTGCTGGGTGAGGGGCGTCAGGTGGTAGCATTGCCCGGCACCACCCTGTGGCAGCTTGAGCGATTGCTGAAGC CACTGGGGCGGGAGCCCCATTCGGTGATCGGCTCCTCCTGTATCGGCGCCTCGGTAATCGGCGGTATTTGTAACAACTCC GGCGGTGCGCTGGTGCAGCGTGGTCCGGCCTATACCGAAATGGCGCTGTATGGACGGGTCAATGAAAAAGGCGAGGCAGA GCTGATCAACCATCTGGGCATTGCGCTGGGCGAGACGCCGGAGGCCATATTGGAGAACCTGTCCCTGCGGCGTTACAGCG ATGCGGATGTTCAGCATGATACGCGCCGGGCCTCCGATCATCAGTATGCGCAGCGCGTCAGGGCGGTCGATGCCGCCACG CCGGCCCGCTTTAATGCCGATGAACGGCGTCTGTTTGAGGCCTCCGGCTGTGCCGGAAAGCTGGCGGTGTTCGCCGTGCG TCTGGATACCTTTCCTGCGGAGGCGCGCCAGCAGGTGTTTTATATCGGTACCGATCGGCCCCAGGTGCTGACCGGGCTGC GGCGGCATATATTGAGCCACTTTACCCACCTGCCGGTGGCCGCGGAGTATCTGCATCGCGATACGTTTGATATCGCCGAG CGCTACGGTAAAGATACCTTTTTGATGATCGAAAAGCTGGGGACAGACAGGATGCCGTTCTTCTTCAACCTGAAGGGGCG GATCGACGCATGGGCAGCGCGTGTGCCGCTGCTGCCGTTCCACCCGGTCGATCGCGCGATGCAGGCGCTGAGCCGTCTGT GGCCGGGGCATCTGCCGCCGCGCATCAGGCAGTACCGCGATCGCTATTCCCACCACCTGTTGCTGAAGATGGCCGGAGAG GGGATCGAGGAGGCACAGCGGTGGCTGAGCGACTATTTTGCCCAGGCCGACGGCGACTTTTTTACCTGTACGCCGGAGGA GGGGAACAAGGCATTTTTACATCGCTTTGCCGCCGCCGGGGCGGCGATACGCTATCAGGCGGTGCATGACCGGCAGGTCG AAGATATTCTGGCGCTGGATATCGCCCTGCGGCGCAACGACACGCAGTGGTTTGAACAGTTGCCGCCGGAGCTGATGCAG GATCTGTCGCACTGTCTGTACTATGGCCACTTTCTGTGTCACGTATTTCATCAGGACTATATCGTGCGCAAGGGGGCCGA TGTGGCGGCGATTAAGGCGAAGATGCTGGCGCTGCTGGATGCGCGCGGCGCGGAGTACCCGGCGGAGCATAACGTGGGCC ATCTCTACCGCGCCAAGCCGCAGCTTGAGGCCTTTTATCGTCATCAGGATCCCACCAATACCCTCAATCCCGGCATCGGC AAGACCAGTAAGTGCCGCAGCTGGGGCTGCGACGGTGGCCACTAG
Upstream 100 bases:
>100_bases GTGTTATTTGGTCTGCATTGTTATGTTTTTTATTTGTTAACTTTAGGCGTTAGACACTATGCTGGACGGCACCTGATTCT GCCGTCACAGGAGTGATGCC
Downstream 100 bases:
>100_bases GGCGTGTCCCGTAGCCGTGCGCGCCAGCGATGCTCACGACCCGTTACGCGATACGCCCTGGGCCAGCTTTTCATCCGCCG GCGGACAGTACAGGCGGTGC
Product: D-lactate dehydrogenase
Products: NA
Alternate protein names: Respiratory D-lactate dehydrogenase [H]
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MPFSRPVPPAEMLLSQLRAIAGPSRVLSDTRKTARYCKGFRSGQGRALAVVFPDTLLAMWRIFKACVEADRIILMQAANT GLTEGSAPSGDDYDRELVIINTLRLGGAQLLGEGRQVVALPGTTLWQLERLLKPLGREPHSVIGSSCIGASVIGGICNNS GGALVQRGPAYTEMALYGRVNEKGEAELINHLGIALGETPEAILENLSLRRYSDADVQHDTRRASDHQYAQRVRAVDAAT PARFNADERRLFEASGCAGKLAVFAVRLDTFPAEARQQVFYIGTDRPQVLTGLRRHILSHFTHLPVAAEYLHRDTFDIAE RYGKDTFLMIEKLGTDRMPFFFNLKGRIDAWAARVPLLPFHPVDRAMQALSRLWPGHLPPRIRQYRDRYSHHLLLKMAGE GIEEAQRWLSDYFAQADGDFFTCTPEEGNKAFLHRFAAAGAAIRYQAVHDRQVEDILALDIALRRNDTQWFEQLPPELMQ DLSHCLYYGHFLCHVFHQDYIVRKGADVAAIKAKMLALLDARGAEYPAEHNVGHLYRAKPQLEAFYRHQDPTNTLNPGIG KTSKCRSWGCDGGH
Sequences:
>Translated_574_residues MPFSRPVPPAEMLLSQLRAIAGPSRVLSDTRKTARYCKGFRSGQGRALAVVFPDTLLAMWRIFKACVEADRIILMQAANT GLTEGSAPSGDDYDRELVIINTLRLGGAQLLGEGRQVVALPGTTLWQLERLLKPLGREPHSVIGSSCIGASVIGGICNNS GGALVQRGPAYTEMALYGRVNEKGEAELINHLGIALGETPEAILENLSLRRYSDADVQHDTRRASDHQYAQRVRAVDAAT PARFNADERRLFEASGCAGKLAVFAVRLDTFPAEARQQVFYIGTDRPQVLTGLRRHILSHFTHLPVAAEYLHRDTFDIAE RYGKDTFLMIEKLGTDRMPFFFNLKGRIDAWAARVPLLPFHPVDRAMQALSRLWPGHLPPRIRQYRDRYSHHLLLKMAGE GIEEAQRWLSDYFAQADGDFFTCTPEEGNKAFLHRFAAAGAAIRYQAVHDRQVEDILALDIALRRNDTQWFEQLPPELMQ DLSHCLYYGHFLCHVFHQDYIVRKGADVAAIKAKMLALLDARGAEYPAEHNVGHLYRAKPQLEAFYRHQDPTNTLNPGIG KTSKCRSWGCDGGH >Mature_573_residues PFSRPVPPAEMLLSQLRAIAGPSRVLSDTRKTARYCKGFRSGQGRALAVVFPDTLLAMWRIFKACVEADRIILMQAANTG LTEGSAPSGDDYDRELVIINTLRLGGAQLLGEGRQVVALPGTTLWQLERLLKPLGREPHSVIGSSCIGASVIGGICNNSG GALVQRGPAYTEMALYGRVNEKGEAELINHLGIALGETPEAILENLSLRRYSDADVQHDTRRASDHQYAQRVRAVDAATP ARFNADERRLFEASGCAGKLAVFAVRLDTFPAEARQQVFYIGTDRPQVLTGLRRHILSHFTHLPVAAEYLHRDTFDIAER YGKDTFLMIEKLGTDRMPFFFNLKGRIDAWAARVPLLPFHPVDRAMQALSRLWPGHLPPRIRQYRDRYSHHLLLKMAGEG IEEAQRWLSDYFAQADGDFFTCTPEEGNKAFLHRFAAAGAAIRYQAVHDRQVEDILALDIALRRNDTQWFEQLPPELMQD LSHCLYYGHFLCHVFHQDYIVRKGADVAAIKAKMLALLDARGAEYPAEHNVGHLYRAKPQLEAFYRHQDPTNTLNPGIGK TSKCRSWGCDGGH
Specific function: First component of the membrane-bound D-lactate oxidase, which is believed to play an important role in the energization of the active transport of a variety of sugars and amino acids [H]
COG id: COG0277
COG function: function code C; FAD/FMN-containing dehydrogenases
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 FAD-binding PCMH-type domain [H]
Homologues:
Organism=Escherichia coli, GI1788454, Length=556, Percent_Identity=69.7841726618705, Blast_Score=825, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016172 - InterPro: IPR016173 - InterPro: IPR012256 - InterPro: IPR016166 - InterPro: IPR016167 - InterPro: IPR016164 - InterPro: IPR016168 - InterPro: IPR015409 - InterPro: IPR006094 [H]
Pfam domain/function: PF01565 FAD_binding_4; PF09330 Lact-deh-memb [H]
EC number: =1.1.1.28 [H]
Molecular weight: Translated: 64217; Mature: 64086
Theoretical pI: Translated: 8.27; Mature: 8.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFSRPVPPAEMLLSQLRAIAGPSRVLSDTRKTARYCKGFRSGQGRALAVVFPDTLLAMW CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH RIFKACVEADRIILMQAANTGLTEGSAPSGDDYDRELVIINTLRLGGAQLLGEGRQVVAL HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHCCHHHHCCCCEEEEE PGTTLWQLERLLKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALYGRV CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCC NEKGEAELINHLGIALGETPEAILENLSLRRYSDADVQHDTRRASDHQYAQRVRAVDAAT CCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCC PARFNADERRLFEASGCAGKLAVFAVRLDTFPAEARQQVFYIGTDRPQVLTGLRRHILSH CCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH FTHLPVAAEYLHRDTFDIAERYGKDTFLMIEKLGTDRMPFFFNLKGRIDAWAARVPLLPF HHCCCHHHHHHHCCHHHHHHHHCCCCEEEHHHCCCCCCCEEEEECCCHHHHHHHCCCCCC HPVDRAMQALSRLWPGHLPPRIRQYRDRYSHHLLLKMAGEGIEEAQRWLSDYFAQADGDF CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHHHHHCCCCE FTCTPEEGNKAFLHRFAAAGAAIRYQAVHDRQVEDILALDIALRRNDTQWFEQLPPELMQ EEECCCCCCHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHH DLSHCLYYGHFLCHVFHQDYIVRKGADVAAIKAKMLALLDARGAEYPAEHNVGHLYRAKP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCH QLEAFYRHQDPTNTLNPGIGKTSKCRSWGCDGGH HHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCC >Mature Secondary Structure PFSRPVPPAEMLLSQLRAIAGPSRVLSDTRKTARYCKGFRSGQGRALAVVFPDTLLAMW CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHH RIFKACVEADRIILMQAANTGLTEGSAPSGDDYDRELVIINTLRLGGAQLLGEGRQVVAL HHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHCCHHHHCCCCEEEEE PGTTLWQLERLLKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALYGRV CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCC NEKGEAELINHLGIALGETPEAILENLSLRRYSDADVQHDTRRASDHQYAQRVRAVDAAT CCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHCCC PARFNADERRLFEASGCAGKLAVFAVRLDTFPAEARQQVFYIGTDRPQVLTGLRRHILSH CCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH FTHLPVAAEYLHRDTFDIAERYGKDTFLMIEKLGTDRMPFFFNLKGRIDAWAARVPLLPF HHCCCHHHHHHHCCHHHHHHHHCCCCEEEHHHCCCCCCCEEEEECCCHHHHHHHCCCCCC HPVDRAMQALSRLWPGHLPPRIRQYRDRYSHHLLLKMAGEGIEEAQRWLSDYFAQADGDF CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEHHHHHCCCHHHHHHHHHHHHHHCCCCE FTCTPEEGNKAFLHRFAAAGAAIRYQAVHDRQVEDILALDIALRRNDTQWFEQLPPELMQ EEECCCCCCHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHH DLSHCLYYGHFLCHVFHQDYIVRKGADVAAIKAKMLALLDARGAEYPAEHNVGHLYRAKP HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCH QLEAFYRHQDPTNTLNPGIGKTSKCRSWGCDGGH HHHHHHHCCCCCCCCCCCCCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 6386470; 3882663; 9278503; 10944213 [H]