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The map label for this gene is ygcF [H]

Identifier: 238919074

GI number: 238919074

Start: 1139946

End: 1140617

Strand: Direct

Name: ygcF [H]

Synonym: NT01EI_1143

Alternate gene names: 238919074

Gene position: 1139946-1140617 (Clockwise)

Preceding gene: 238919070

Following gene: 238919076

Centisome position: 29.9

GC content: 62.8

Gene sequence:

>672_bases
ATGCAGTATCCGATCAATGAAGTATTTCAGAGTTTACAGGGCGAAGGTTTTTATACCGGCGTTCCGGCGATTTTTATTCG
TCTGCAGGGGTGCCCGGTCGGCTGTAGCTGGTGCGATAGTCAGCACACCTGGCATCAGCGTCCGGAGCGCCAGGCCGATC
TGGCGCAGATCGTTGAAAAGACGGCGGAGAGCGAAGCCTGGGCCAGCGCCGATGCGGCGGCGCTGGTTGCGCTGTTACGG
CAGCGGGGCTATCAGGCCCGCCGCGTAGTGATCACCGGCGGCGAGCCCTGTATGTACGATCTGCTGCCGTTGACCACGGC
GCTGGAGCAGGGCGGCTATCGCTGCCAGATAGAGACCAGCGGAACCCACCCGGTGCGCTGCAGCGCACAGACCTGGGTGA
CCGTATCCCCCAAGGTGGGGATGCGCGGAGGGATGGAGGTGCTTACCGACGCGCTGCGCCGCGCCAACGAGATAAAACAC
CCGGTTGCGCGGGCGCGCGATATCGAGGCGCTGGATGCGCTGCTGGCGCGTTTGGACGGTGAGTTGCCGCCGGTGGTGGC
GCTACAGCCGATCTCCTGCAAGGAAGAGGCGACCCGCCTGTGTATTGAAACGTGCCTGGCGCGCAACTGGCGCCTGTCCA
TGCAGACTCATAAATACCTGAATATCGTCTGA

Upstream 100 bases:

>100_bases
GCGTTTATCGCGGCCGATGAGGCGGCGGCGGTTTGGCGTGCGCGGGGAAATCTGCCACAATGCCGCCCGTCCGAGGCGTC
CTCAAACAAGGCAGAACACG

Downstream 100 bases:

>100_bases
GTAGCGCGCCCCGCCGGACATCGGCGGGGCGCGTTGGCACTAGCGTCGGGCCGCGGGCGCCGGGCGCCGCGGCGTGTGGA
GACCGACCGGTTGGGTCGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQYPINEVFQSLQGEGFYTGVPAIFIRLQGCPVGCSWCDSQHTWHQRPERQADLAQIVEKTAESEAWASADAAALVALLR
QRGYQARRVVITGGEPCMYDLLPLTTALEQGGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKH
PVARARDIEALDALLARLDGELPPVVALQPISCKEEATRLCIETCLARNWRLSMQTHKYLNIV

Sequences:

>Translated_223_residues
MQYPINEVFQSLQGEGFYTGVPAIFIRLQGCPVGCSWCDSQHTWHQRPERQADLAQIVEKTAESEAWASADAAALVALLR
QRGYQARRVVITGGEPCMYDLLPLTTALEQGGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKH
PVARARDIEALDALLARLDGELPPVVALQPISCKEEATRLCIETCLARNWRLSMQTHKYLNIV
>Mature_223_residues
MQYPINEVFQSLQGEGFYTGVPAIFIRLQGCPVGCSWCDSQHTWHQRPERQADLAQIVEKTAESEAWASADAAALVALLR
QRGYQARRVVITGGEPCMYDLLPLTTALEQGGYRCQIETSGTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKH
PVARARDIEALDALLARLDGELPPVVALQPISCKEEATRLCIETCLARNWRLSMQTHKYLNIV

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=222, Percent_Identity=69.3693693693694, Blast_Score=337, Evalue=3e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24791; Mature: 24791

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
4.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYPINEVFQSLQGEGFYTGVPAIFIRLQGCPVGCSWCDSQHTWHQRPERQADLAQIVEK
CCCCHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH
TAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPLTTALEQGGYRCQIETS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
GTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKHPVARARDIEALDALLARLDG
CCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ELPPVVALQPISCKEEATRLCIETCLARNWRLSMQTHKYLNIV
CCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHEECC
>Mature Secondary Structure
MQYPINEVFQSLQGEGFYTGVPAIFIRLQGCPVGCSWCDSQHTWHQRPERQADLAQIVEK
CCCCHHHHHHHHCCCCCEECCCEEEEEECCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH
TAESEAWASADAAALVALLRQRGYQARRVVITGGEPCMYDLLPLTTALEQGGYRCQIETS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECC
GTHPVRCSAQTWVTVSPKVGMRGGMEVLTDALRRANEIKHPVARARDIEALDALLARLDG
CCCCEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ELPPVVALQPISCKEEATRLCIETCLARNWRLSMQTHKYLNIV
CCCCEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]