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The map label for this gene is nudC [H]

Identifier: 238917904

GI number: 238917904

Start: 2053945

End: 2054898

Strand: Reverse

Name: nudC [H]

Synonym: EUBELI_01991

Alternate gene names: 238917904

Gene position: 2054898-2053945 (Counterclockwise)

Preceding gene: 238917905

Following gene: 238917901

Centisome position: 95.84

GC content: 40.78

Gene sequence:

>954_bases
ATGATACAGGATATATGGCCAAAACATCTGGACAATCAGTATAAGAATCTTAAGTCAGGCAATGAGGACACTGTGTTTTA
TTTTCAGGGTTCCTCGTTGCTTGCAAGACCATCAGGACATTTTAACTCACAGAATCCTGAAGAAAATGTATTAATATATC
CACAGTATGATGAGTTCGTTCAGGGGATAAAGTCCTCTTACGGAGACAAAGCTGTGGATAACTTTGAATTCATATATCTG
TTGTCAATTGATGAGGAACATTTTTTCCTCGCAAGAAAGACAGGAAGCCTCGAAAGAGGCACATTCTTGGGAGAGATGGC
TGATTCAGCTGTACACAAGGATATGTATTCTTTCGTCAGAGGATATGAATTCATAGGAGTCGATTCTTTCCGTAAGGCAC
AGCCAAGAGAGCATGCTTATGCGGCTATTACTGCATTTCATCTGTATGGCTGGTACAGGGATAATCATTTCTGTGGAAGA
TGCGGAAAACCACTCAAGCATGATGACAAGCAGAGAATGTTACGCTGTGACTGCTGTAAGAATATGGTATTTCCTAAGAT
ATGTCCGGCTGTTATTGTTGCAGTTACAGATAAGGACAGAATTCTTCTTACTAAATATGCGGGAAGAACTTACAGGAATT
ATGCGCTTATTGCCGGATTCACTGAGATTGGTGAAACAACAGAGGAAACTGTAAGCAGAGAAGTTATGGAAGAAGTAGGT
GTGAAGGTTAAAAATATCACATATTATAAGAGCCAGCCTTGGGGACTCAGCGGTTCTCAGCTTCTTGGTTACTTCTGTGA
GCTTGACGGTGACGACACAATAACTCTTGAAGAAGATGAGTTATCGGTCGGCACATGGGTCAAGGCAGATGATATAGATG
TAATTGATGACCATATCAGTCTCACAAGGGAAATGATTGAGAAATTCCGCAGTGAGCATGTGAGTCACAATTAA

Upstream 100 bases:

>100_bases
TATGAATTCCAGATGGCGTATAAGAAGAAAGGTCCTGTTCTTTACGTTGAAAGCGTAGAAAAGACAGGTGCACCTAAGGA
AGAGATGGTGTTCTTCTGAT

Downstream 100 bases:

>100_bases
TTGTAATCTTTAAAACTAATATTAAGATCTATGGTATTACCACTGACACCGTCTAACTTAGCTGATTCAGTGTATTGCCA
TATAGAGAATTCATATGGGA

Product: NADH pyrophosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MIQDIWPKHLDNQYKNLKSGNEDTVFYFQGSSLLARPSGHFNSQNPEENVLIYPQYDEFVQGIKSSYGDKAVDNFEFIYL
LSIDEEHFFLARKTGSLERGTFLGEMADSAVHKDMYSFVRGYEFIGVDSFRKAQPREHAYAAITAFHLYGWYRDNHFCGR
CGKPLKHDDKQRMLRCDCCKNMVFPKICPAVIVAVTDKDRILLTKYAGRTYRNYALIAGFTEIGETTEETVSREVMEEVG
VKVKNITYYKSQPWGLSGSQLLGYFCELDGDDTITLEEDELSVGTWVKADDIDVIDDHISLTREMIEKFRSEHVSHN

Sequences:

>Translated_317_residues
MIQDIWPKHLDNQYKNLKSGNEDTVFYFQGSSLLARPSGHFNSQNPEENVLIYPQYDEFVQGIKSSYGDKAVDNFEFIYL
LSIDEEHFFLARKTGSLERGTFLGEMADSAVHKDMYSFVRGYEFIGVDSFRKAQPREHAYAAITAFHLYGWYRDNHFCGR
CGKPLKHDDKQRMLRCDCCKNMVFPKICPAVIVAVTDKDRILLTKYAGRTYRNYALIAGFTEIGETTEETVSREVMEEVG
VKVKNITYYKSQPWGLSGSQLLGYFCELDGDDTITLEEDELSVGTWVKADDIDVIDDHISLTREMIEKFRSEHVSHN
>Mature_317_residues
MIQDIWPKHLDNQYKNLKSGNEDTVFYFQGSSLLARPSGHFNSQNPEENVLIYPQYDEFVQGIKSSYGDKAVDNFEFIYL
LSIDEEHFFLARKTGSLERGTFLGEMADSAVHKDMYSFVRGYEFIGVDSFRKAQPREHAYAAITAFHLYGWYRDNHFCGR
CGKPLKHDDKQRMLRCDCCKNMVFPKICPAVIVAVTDKDRILLTKYAGRTYRNYALIAGFTEIGETTEETVSREVMEEVG
VKVKNITYYKSQPWGLSGSQLLGYFCELDGDDTITLEEDELSVGTWVKADDIDVIDDHISLTREMIEKFRSEHVSHN

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI50593112, Length=151, Percent_Identity=33.7748344370861, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI13899267, Length=172, Percent_Identity=31.3953488372093, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI48994995, Length=156, Percent_Identity=35.8974358974359, Blast_Score=119, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71986510, Length=143, Percent_Identity=29.3706293706294, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212645999, Length=143, Percent_Identity=29.3706293706294, Blast_Score=73, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321371, Length=309, Percent_Identity=27.5080906148867, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 36514; Mature: 36514

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQDIWPKHLDNQYKNLKSGNEDTVFYFQGSSLLARPSGHFNSQNPEENVLIYPQYDEFV
CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCEEEEECHHHHH
QGIKSSYGDKAVDNFEFIYLLSIDEEHFFLARKTGSLERGTFLGEMADSAVHKDMYSFVR
HHHHHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
GYEFIGVDSFRKAQPREHAYAAITAFHLYGWYRDNHFCGRCGKPLKHDDKQRMLRCDCCK
CCEEECCCCHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
NMVFPKICPAVIVAVTDKDRILLTKYAGRTYRNYALIAGFTEIGETTEETVSREVMEEVG
CCCCHHHCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHC
VKVKNITYYKSQPWGLSGSQLLGYFCELDGDDTITLEEDELSVGTWVKADDIDVIDDHIS
CEEEEEEEEECCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCEEECCCCCHHHHHHH
LTREMIEKFRSEHVSHN
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIQDIWPKHLDNQYKNLKSGNEDTVFYFQGSSLLARPSGHFNSQNPEENVLIYPQYDEFV
CCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEEECCCCCCCCCCCCCCEEEEECHHHHH
QGIKSSYGDKAVDNFEFIYLLSIDEEHFFLARKTGSLERGTFLGEMADSAVHKDMYSFVR
HHHHHHCCCCCCCCEEEEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
GYEFIGVDSFRKAQPREHAYAAITAFHLYGWYRDNHFCGRCGKPLKHDDKQRMLRCDCCK
CCEEECCCCHHHCCCHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
NMVFPKICPAVIVAVTDKDRILLTKYAGRTYRNYALIAGFTEIGETTEETVSREVMEEVG
CCCCHHHCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHC
VKVKNITYYKSQPWGLSGSQLLGYFCELDGDDTITLEEDELSVGTWVKADDIDVIDDHIS
CEEEEEEEEECCCCCCCHHHHHHHHEEECCCCEEEEECCCCCCCCEEECCCCCHHHHHHH
LTREMIEKFRSEHVSHN
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA