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The map label for this gene is 238917799

Identifier: 238917799

GI number: 238917799

Start: 1940787

End: 1942022

Strand: Direct

Name: 238917799

Synonym: EUBELI_01880

Alternate gene names: NA

Gene position: 1940787-1942022 (Clockwise)

Preceding gene: 238917798

Following gene: 238917801

Centisome position: 90.51

GC content: 41.02

Gene sequence:

>1236_bases
ATGGACACTATACATTCAGACATTTTCCCAGACGGAACTCCTGTTGATGGCTGGTTTCACAATACCAGCATTCCAGAACT
TACCAAACTGGGAAAGCAATATATTATTACAGATTATGGTATACATGATGACGGCAGAATATACACAGATAATTTCCAGA
AGCTGATAGACCTTGTATACAATGCTGGTGGCGGTGTAATCGTTATTCCGCATGGTACATACATAACTGGAGCTTTATTT
TTCAGACAGGGAGTTAATCTATATATTGAAGGTGGTGCAACACTTATGGGAAGTGACGACATCAGCGATTATCCGGTCTG
TGAAACAAGAATAGAAGGTGAAACCTGTCAGTATTTTGCTGCACTTATCAACGCTTCTGGAATTGATGGCTTTACATTGT
GCGGTAATGGAACGATAGACGGTAATGGCTTACGAAGCTGGAAAGCCTTCTGGCAGCGAAGAACATGGAATTCCAACTGC
ACCAACAAAGACGAACAGCGGGCAAGGCTTATCTATATGGCTGGTTGCACCAATGTTACTGTTGCCGGATTGCACATTTG
TAATTCGCAGTTCTGGACTAATCACCTTTACAAATGTTCTCATATACGTTACCTTAACTGCCGCATTACAAGCCCGTCTG
CTCCTGTCAAAGCGCCTAGCACTGACGCAATAGACATTGATGCCTGCACTGATATTCTTATTAAAGGCTGCACAATTAAT
GTAAATGATGACGCAGTTGCTTTAAAAGGCGGCAAAGGGCCATTTGCTGACAGTGACAAGAACAATGGCGCTAATGAGCG
CATAATTATTGAGGACTGCACATTTGAATTCTGCCATGGATGCCTTACATGTGGCTCAGAATCCATACACAATAAGAATA
TAATAATGCGTCACATCAAGGTCGACTCAGGTTACAATCTGCTCTGGCTGAAAATGCGTCCCGACACGCCACAGCATTAT
GAATACATCACTATAGAATATGTTCAGGGAAAGATATTTAATTTCATCAACATTAATCCGTGGACACAGTTTTTCAACCT
TAAGGGAAAAACTGATATTTCCCCGTCTTCCACAGAACACATTATAATAAGAAAGAGTACCTGCACCTGTAATGTTTTCC
GCAACATAAAAGAAGCACCTGAACAATACACACTCACAGATATCCAGATAGATGACAATATAATAGAAGAAATCGGAACA
CCTTCCGATAAATCAAAACATACCGGAGCAGAATAA

Upstream 100 bases:

>100_bases
ATCGAGAAAACCAAAAGATACAAGAATCTTGTGAGTATTCTGATGCAGGAAGCTTAAAAGGAATACTGTTTTTCTAACAA
ATAAAAACGGAGTTATATAT

Downstream 100 bases:

>100_bases
CTGCCCCGGTATATTTTATTATGTATAGCTTATTATATTTACCAATTAAGCTACTGTCTTCTCAGAGTTCTTCTCGCTCT
TTGCATAGCTCTTTACTGAG

Product: glycoside hydrolase family 28

Products: NA

Alternate protein names: Polygalacturonase; Glycoside Hydrolase Family Protein; Exo-Poly-Alpha-D-Galacturonosidase; Galacturan 1 4-Alpha-Galacturonidase; Glycoside Hydrolase; Pectate Lyase; Endopolygalacturonase; Exopolygalacturonase; Polygalacturonase Superfamily; Polygalacturonase Family Protein; Glycosy Hydrolase Family Protein; Polygalacturonase Protein; Glycosyl Hydrolase Family; Polygalacturonase/Beta-Xylosidase

Number of amino acids: Translated: 411; Mature: 411

Protein sequence:

>411_residues
MDTIHSDIFPDGTPVDGWFHNTSIPELTKLGKQYIITDYGIHDDGRIYTDNFQKLIDLVYNAGGGVIVIPHGTYITGALF
FRQGVNLYIEGGATLMGSDDISDYPVCETRIEGETCQYFAALINASGIDGFTLCGNGTIDGNGLRSWKAFWQRRTWNSNC
TNKDEQRARLIYMAGCTNVTVAGLHICNSQFWTNHLYKCSHIRYLNCRITSPSAPVKAPSTDAIDIDACTDILIKGCTIN
VNDDAVALKGGKGPFADSDKNNGANERIIIEDCTFEFCHGCLTCGSESIHNKNIIMRHIKVDSGYNLLWLKMRPDTPQHY
EYITIEYVQGKIFNFININPWTQFFNLKGKTDISPSSTEHIIIRKSTCTCNVFRNIKEAPEQYTLTDIQIDDNIIEEIGT
PSDKSKHTGAE

Sequences:

>Translated_411_residues
MDTIHSDIFPDGTPVDGWFHNTSIPELTKLGKQYIITDYGIHDDGRIYTDNFQKLIDLVYNAGGGVIVIPHGTYITGALF
FRQGVNLYIEGGATLMGSDDISDYPVCETRIEGETCQYFAALINASGIDGFTLCGNGTIDGNGLRSWKAFWQRRTWNSNC
TNKDEQRARLIYMAGCTNVTVAGLHICNSQFWTNHLYKCSHIRYLNCRITSPSAPVKAPSTDAIDIDACTDILIKGCTIN
VNDDAVALKGGKGPFADSDKNNGANERIIIEDCTFEFCHGCLTCGSESIHNKNIIMRHIKVDSGYNLLWLKMRPDTPQHY
EYITIEYVQGKIFNFININPWTQFFNLKGKTDISPSSTEHIIIRKSTCTCNVFRNIKEAPEQYTLTDIQIDDNIIEEIGT
PSDKSKHTGAE
>Mature_411_residues
MDTIHSDIFPDGTPVDGWFHNTSIPELTKLGKQYIITDYGIHDDGRIYTDNFQKLIDLVYNAGGGVIVIPHGTYITGALF
FRQGVNLYIEGGATLMGSDDISDYPVCETRIEGETCQYFAALINASGIDGFTLCGNGTIDGNGLRSWKAFWQRRTWNSNC
TNKDEQRARLIYMAGCTNVTVAGLHICNSQFWTNHLYKCSHIRYLNCRITSPSAPVKAPSTDAIDIDACTDILIKGCTIN
VNDDAVALKGGKGPFADSDKNNGANERIIIEDCTFEFCHGCLTCGSESIHNKNIIMRHIKVDSGYNLLWLKMRPDTPQHY
EYITIEYVQGKIFNFININPWTQFFNLKGKTDISPSSTEHIIIRKSTCTCNVFRNIKEAPEQYTLTDIQIDDNIIEEIGT
PSDKSKHTGAE

Specific function: Unknown

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45935; Mature: 45935

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIHSDIFPDGTPVDGWFHNTSIPELTKLGKQYIITDYGIHDDGRIYTDNFQKLIDLVY
CCCCCCCCCCCCCCCCCEECCCCCHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHHH
NAGGGVIVIPHGTYITGALFFRQGVNLYIEGGATLMGSDDISDYPVCETRIEGETCQYFA
CCCCCEEEEECCCHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCEEEEECCHHHHHHH
ALINASGIDGFTLCGNGTIDGNGLRSWKAFWQRRTWNSNCTNKDEQRARLIYMAGCTNVT
HHHHCCCCCCEEEECCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEE
VAGLHICNSQFWTNHLYKCSHIRYLNCRITSPSAPVKAPSTDAIDIDACTDILIKGCTIN
EEEEEEECCHHHHHHCEEECCEEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHEECCEEE
VNDDAVALKGGKGPFADSDKNNGANERIIIEDCTFEFCHGCLTCGSESIHNKNIIMRHIK
ECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCEEEEEEE
VDSGYNLLWLKMRPDTPQHYEYITIEYVQGKIFNFININPWTQFFNLKGKTDISPSSTEH
ECCCCCEEEEEECCCCCCCEEEEEEEEECCEEEEEEECCCHHHEEECCCCCCCCCCCCCE
IIIRKSTCTCNVFRNIKEAPEQYTLTDIQIDDNIIEEIGTPSDKSKHTGAE
EEEEECCCEEHHHHHHHHCCCCEEEEEEEECHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MDTIHSDIFPDGTPVDGWFHNTSIPELTKLGKQYIITDYGIHDDGRIYTDNFQKLIDLVY
CCCCCCCCCCCCCCCCCEECCCCCHHHHHCCCEEEEEECCCCCCCCEEHHHHHHHHHHHH
NAGGGVIVIPHGTYITGALFFRQGVNLYIEGGATLMGSDDISDYPVCETRIEGETCQYFA
CCCCCEEEEECCCHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCEEEEECCHHHHHHH
ALINASGIDGFTLCGNGTIDGNGLRSWKAFWQRRTWNSNCTNKDEQRARLIYMAGCTNVT
HHHHCCCCCCEEEECCCEECCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCEE
VAGLHICNSQFWTNHLYKCSHIRYLNCRITSPSAPVKAPSTDAIDIDACTDILIKGCTIN
EEEEEEECCHHHHHHCEEECCEEEEEEEEECCCCCCCCCCCCCEEHHHHHHHHEECCEEE
VNDDAVALKGGKGPFADSDKNNGANERIIIEDCTFEFCHGCLTCGSESIHNKNIIMRHIK
ECCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCCEEEEEEE
VDSGYNLLWLKMRPDTPQHYEYITIEYVQGKIFNFININPWTQFFNLKGKTDISPSSTEH
ECCCCCEEEEEECCCCCCCEEEEEEEEECCEEEEEEECCCHHHEEECCCCCCCCCCCCCE
IIIRKSTCTCNVFRNIKEAPEQYTLTDIQIDDNIIEEIGTPSDKSKHTGAE
EEEEECCCEEHHHHHHHHCCCCEEEEEEEECHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA