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The map label for this gene is int [H]

Identifier: 238917723

GI number: 238917723

Start: 1861046

End: 1862248

Strand: Reverse

Name: int [H]

Synonym: EUBELI_01803

Alternate gene names: 238917723

Gene position: 1862248-1861046 (Counterclockwise)

Preceding gene: 238917724

Following gene: 238917722

Centisome position: 86.85

GC content: 40.48

Gene sequence:

>1203_bases
ATGAATATGCCAGCTTATAAAGACAGTAAGACAGGCACCTGGTTTGTCAAATTCTATTGTAAGGACTGGACTGGGGAAAA
TAAACAGATAAAGAAGAGAGGATTTGCAACAAAGAGGGAAGCACTTGATTATGAGCGTAATTACAAAATACGGCAGGAGA
ATAATCTGGATATGACATTTGGAGAGTTCTGGAAGTTGTATACAGAGGATGTGAAAAATTATGTCAAACTCAACACGTGG
CTTACAAAAGAACACATTGTGGATACAAAGATACTTCCATATTTCAGGAATCTTAAGATGAATGAGATTACACCGGGAGA
TGTACGCAAGTGGCAGAATGAGATGGTAGCATTCCGTTATGAGAATGGGAAATGTTATTCCCAGACTTATAAGAAGACAA
TGCATAACATCTTAAGTGCGATATTCAATCATGCGTGCAGGTTTTATAATCTGAAATCAAATCCGGCAAGGCAGGCTGGA
AATATGGGCAGGGAAGAAAAGAAGGAAATGCTTTTCTGGACAACTGAAGAATATAAGAAGTTTTCAGAAGCGGTGATTGA
TAAGCCGGTTTCATTTTATGCATTTGAAATGCTGTACTGGACGGGAATGAGATTAGGTGAGCTGCTTGCACTTACGATGG
AAGATTTTGATTTTGAAAAGAACACAGTCAGAATAAATAAATCGTATCAGCGGCTGCAGGGGCAGGATGTTATTACAACA
CCGAAAACACCTAAGAGCAACAGAACAATCAAGCTGCCGAAGTTCCTTGCCGAAGAAATGCAGGAATATTTTGCAATGTT
ATATGACCAGACACCAACAGACAGGATTTTTCTGGTAACAAAGAGCTTTCTTCATCATGAGATGGAGCGTGGTTGCAAAT
TATCCGGTGTGAAGAAAATCAGAATCCATGATCTAAGGCATTCGCACATTTCACATCTGATCGACCTCGGGTTTTCCGCA
GTTGCAATAGCTGACAGGGTTGGTCATGAGAGCATTGATATCACATATCGTTATTCGCATCTGTTTCCGTCAAAGCAGGT
GGCAATGGCGGACAGACTTGATGCTGTCAATGCAAGCTTTGAGGATTGCGAAGATCAGGATGATGATGTAGAAATCATGC
AGACAGAGGAAACAGCACCTATGATTGATATGGATGCGGCTGCGGAAAAAATTATAAGCATTGATAAGTACAAGGCAGTC
TGA

Upstream 100 bases:

>100_bases
GTGATGCAGGATAAGCAACAGGTAAGAAGATTGTGATAGAGGCAGGTGCAGAAGCGATACGGCTTAGGCATCTGCTTCTT
CATATGGAAAGAAGGAGATG

Downstream 100 bases:

>100_bases
TAATGCCTATGTAAAACATTATGAATCATGCCGGTACAAGTTTTGCTGGATATATGCAGCAGAAATTAAAAGAATAGATT
TTATATCGGAAGGAGCAGAT

Product: integrase/recombinase XerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 400; Mature: 400

Protein sequence:

>400_residues
MNMPAYKDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDYERNYKIRQENNLDMTFGEFWKLYTEDVKNYVKLNTW
LTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAG
NMGREEKKEMLFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDVITT
PKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMERGCKLSGVKKIRIHDLRHSHISHLIDLGFSA
VAIADRVGHESIDITYRYSHLFPSKQVAMADRLDAVNASFEDCEDQDDDVEIMQTEETAPMIDMDAAAEKIISIDKYKAV

Sequences:

>Translated_400_residues
MNMPAYKDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDYERNYKIRQENNLDMTFGEFWKLYTEDVKNYVKLNTW
LTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAG
NMGREEKKEMLFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDVITT
PKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMERGCKLSGVKKIRIHDLRHSHISHLIDLGFSA
VAIADRVGHESIDITYRYSHLFPSKQVAMADRLDAVNASFEDCEDQDDDVEIMQTEETAPMIDMDAAAEKIISIDKYKAV
>Mature_400_residues
MNMPAYKDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDYERNYKIRQENNLDMTFGEFWKLYTEDVKNYVKLNTW
LTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVAFRYENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAG
NMGREEKKEMLFWTTEEYKKFSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDVITT
PKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMERGCKLSGVKKIRIHDLRHSHISHLIDLGFSA
VAIADRVGHESIDITYRYSHLFPSKQVAMADRLDAVNASFEDCEDQDDDVEIMQTEETAPMIDMDAAAEKIISIDKYKAV

Specific function: Putative integrase that is involved in the insertion of the integrative and conjugative element ICEBs1. Required for the excision of ICEBs1 from the donor cell genome and subsequent integration in the recipient cell genome. Appears not to be transferred t

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 47229; Mature: 47229

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMPAYKDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDYERNYKIRQENNLDMTF
CCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCHHHHHHCHHHCCEEECCCCCCCCH
GEFWKLYTEDVKNYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVAFRY
HHHHHHHHHHHHHHHHHHHEECHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEE
ENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKKEMLFWTTEEYKK
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHCCCCHHHHHHEEEEEHHHHHH
FSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDVITT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCEEEC
PKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMERGCKLSGVKKI
CCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCCEEEE
RIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVAMADRLDAVNASF
EEEHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCH
EDCEDQDDDVEIMQTEETAPMIDMDAAAEKIISIDKYKAV
HHCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNMPAYKDSKTGTWFVKFYCKDWTGENKQIKKRGFATKREALDYERNYKIRQENNLDMTF
CCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCHHHHHHCHHHCCEEECCCCCCCCH
GEFWKLYTEDVKNYVKLNTWLTKEHIVDTKILPYFRNLKMNEITPGDVRKWQNEMVAFRY
HHHHHHHHHHHHHHHHHHHEECHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHCCEEEEEE
ENGKCYSQTYKKTMHNILSAIFNHACRFYNLKSNPARQAGNMGREEKKEMLFWTTEEYKK
CCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHCCCCHHHHHHEEEEEHHHHHH
FSEAVIDKPVSFYAFEMLYWTGMRLGELLALTMEDFDFEKNTVRINKSYQRLQGQDVITT
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHCCCCEEEC
PKTPKSNRTIKLPKFLAEEMQEYFAMLYDQTPTDRIFLVTKSFLHHEMERGCKLSGVKKI
CCCCCCCCEEECHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHCCCCCCCEEEE
RIHDLRHSHISHLIDLGFSAVAIADRVGHESIDITYRYSHLFPSKQVAMADRLDAVNASF
EEEHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCH
EDCEDQDDDVEIMQTEETAPMIDMDAAAEKIISIDKYKAV
HHCCCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]