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The map label for this gene is ydeC [H]

Identifier: 238917634

GI number: 238917634

Start: 1782683

End: 1783558

Strand: Direct

Name: ydeC [H]

Synonym: EUBELI_01713

Alternate gene names: 238917634

Gene position: 1782683-1783558 (Clockwise)

Preceding gene: 238917620

Following gene: 238917651

Centisome position: 83.14

GC content: 36.3

Gene sequence:

>876_bases
ATGAATATAACAGATTATGGACCACTGAAAGAAACCAAGTCTCATTTTGATTCAGATTTTTTATATAACACTTACCCATG
CTCTATCCCGCTTGATTTTACGGAAGTTCCGCTGCACTGGCATAATGAAATGGAGCTTATATACATCAAGAAGGGATGCA
TGATCGTAAGCGTTGACCTTGAGTATTCTGTTGTAAATGCTGGAGATATTGTTGTTGTCATGCCTGGACATATCCATTCT
ATTATCCAGAACGAGAGTGATTCATGCGAATACGAAAATATTCTTTTTAATCTTGATATGCTTGTTAGCAGGCAGTGTGA
TTATGATACCGTAAGCTTTTTTAACGGAATTGCCGGCTTTAATGGGTATTGCCCTCCTGTTATCAGTAAAACTGCGCCAC
ACTATTCTGATTTAATTCATTATATTGATGAAGCTGATAATATATGCAAGTATTTCCCTGACGGGTACAGGCTGAAAATC
CGTGCATGTCTTTTTAATTTCTTTTTTGAGCTTAATGCACATTTTTACACGCATACGGATATGCCTGTACACTTGTCTGA
TGATAAGATGGATAAGCTGAAACTGGTACTTAATTATATTGAGAAAAACTTCGCGCGTGCAATATCCATTGAAGAGATTG
CTCAGTGGTGTCATTTCAGCCAGTCGCATTTTATGAAGTTTTTTAAGAACTGCACCGGCACATCTTTTATCACTTACTTA
AACGACTACCGGCTTATTATTGCTGCAAGAATATTAAAAACCACAACCCAGCCAGTTATTATAGTGGCTTCTGATTGTGG
TTTTGATAATATATCTTACTTTAATAGAAAATTCAAAGAAAAATATGGTGTTTCTCCGAGGGAATTCAGGAAATAA

Upstream 100 bases:

>100_bases
CATTCTTGTATTTATATTTTATTATAGGGTTGCTGGAAAAATTCTCTTGCTTTATAATGGGATAAACTTGTACTATTCTA
TCATATTTAAGGAGAACCTT

Downstream 100 bases:

>100_bases
GGTGTTATTAATATAATCTGTTTTTTACATATTCTTCAAATCTTGGCAGTGCCATTGCTATATTCTCATGTAATGGTTTT
TAATAGCTGCATAATTTTAT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNITDYGPLKETKSHFDSDFLYNTYPCSIPLDFTEVPLHWHNEMELIYIKKGCMIVSVDLEYSVVNAGDIVVVMPGHIHS
IIQNESDSCEYENILFNLDMLVSRQCDYDTVSFFNGIAGFNGYCPPVISKTAPHYSDLIHYIDEADNICKYFPDGYRLKI
RACLFNFFFELNAHFYTHTDMPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYL
NDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK

Sequences:

>Translated_291_residues
MNITDYGPLKETKSHFDSDFLYNTYPCSIPLDFTEVPLHWHNEMELIYIKKGCMIVSVDLEYSVVNAGDIVVVMPGHIHS
IIQNESDSCEYENILFNLDMLVSRQCDYDTVSFFNGIAGFNGYCPPVISKTAPHYSDLIHYIDEADNICKYFPDGYRLKI
RACLFNFFFELNAHFYTHTDMPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYL
NDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK
>Mature_291_residues
MNITDYGPLKETKSHFDSDFLYNTYPCSIPLDFTEVPLHWHNEMELIYIKKGCMIVSVDLEYSVVNAGDIVVVMPGHIHS
IIQNESDSCEYENILFNLDMLVSRQCDYDTVSFFNGIAGFNGYCPPVISKTAPHYSDLIHYIDEADNICKYFPDGYRLKI
RACLFNFFFELNAHFYTHTDMPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYL
NDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33908; Mature: 33908

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITDYGPLKETKSHFDSDFLYNTYPCSIPLDFTEVPLHWHNEMELIYIKKGCMIVSVDL
CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCEEECCCEEEEEEECCCEEEEEEC
EYSVVNAGDIVVVMPGHIHSIIQNESDSCEYENILFNLDMLVSRQCDYDTVSFFNGIAGF
EEEEECCCCEEEECCCHHHHHHCCCCCCCCHHHHEEEHHHHHCCCCCCHHHHHHHHHCCC
NGYCPPVISKTAPHYSDLIHYIDEADNICKYFPDGYRLKIRACLFNFFFELNAHFYTHTD
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCEEEEECC
MPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYL
CEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHH
NDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK
CCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure
MNITDYGPLKETKSHFDSDFLYNTYPCSIPLDFTEVPLHWHNEMELIYIKKGCMIVSVDL
CCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCEEECCCEEEEEEECCCEEEEEEC
EYSVVNAGDIVVVMPGHIHSIIQNESDSCEYENILFNLDMLVSRQCDYDTVSFFNGIAGF
EEEEECCCCEEEECCCHHHHHHCCCCCCCCHHHHEEEHHHHHCCCCCCHHHHHHHHHCCC
NGYCPPVISKTAPHYSDLIHYIDEADNICKYFPDGYRLKIRACLFNFFFELNAHFYTHTD
CCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCEEEEECC
MPVHLSDDKMDKLKLVLNYIEKNFARAISIEEIAQWCHFSQSHFMKFFKNCTGTSFITYL
CEEEECCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHH
NDYRLIIAARILKTTTQPVIIVASDCGFDNISYFNRKFKEKYGVSPREFRK
CCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]