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The map label for this gene is cph2 [H]

Identifier: 238917332

GI number: 238917332

Start: 1451774

End: 1452931

Strand: Reverse

Name: cph2 [H]

Synonym: EUBELI_01409

Alternate gene names: 238917332

Gene position: 1452931-1451774 (Counterclockwise)

Preceding gene: 238917333

Following gene: 238917331

Centisome position: 67.76

GC content: 35.66

Gene sequence:

>1158_bases
ATGGGGAGAGTGGATTGTATGGGTGCGAAGGGAAAAATGATCGAATTAAACCGAGGGGTTTCTGATATTAATATGAAGAG
GGCGTATTTATCTTCTGTTTTACTGTCTGTAGCTGTGCCCGTATCGGTAATTGCTGCATGTATTGGAAATTGGAGTGGAG
TTTTTGCAAGAAATACATATATTGTTGTGGCTGGTCTTATGGAGGTCTTTCAGCTTTTATTTATGTTTGTTTTAAGAAAG
CAGTATAGTCTTGATGAGTTTGACAGATTTCATGCTATATATACAGCTTATTTTTATGTTACATTTGTGTATCTTATGTT
TGGCGCTGTATGTGATATTGCACAGTCAGGGAGCATACTGTTTTATCTGGCAGCATGTGTATACATAGTTTTTATACCTG
CATTTACTAAGGCAGAATGTATAGGAATATTAATGTTCCAGACAGTTGTGGTTATTTTACTATCTATAGTAAGCAGTATG
GATTTAAGAATGTTTTTTGATGTCTGTATTATTCAGGCTGCAACTATACTGCTGGTTGCATATCAGCATAATCTTGCAGT
ACAGAGAGTCCGCGTTAATATGCAGCTTAAAAGGAAGAAAGATTATTCTGAGCATGATGCACTAACAGGTCTTTATAATA
GGAGAGGACTTGATGCAAGAATTAAAGCAATATGGCCTTTTTGCGAGAGAAACAGATTATCTGTGGCAATGATTGCAGTT
GATGTGGATTATTTTAAAAAATATAATGATACATTTGGACATCCCAAAGGAGATGAGTGCTTAAAAACAGTTGCTGGCAT
ACTAAAAAATTCAGCACAGAGAAGTACGGATGTGGTTACAAGAACAGGTGGAGAAGAGTTCATTGTTTTTGTGCAGGATA
TGGATGAGGAAAGTCTTATTTCACTTGCTATGAAGATAAGAAATAATCTGGATCAGAAACATATAGAACATGCATATTAC
GGTGTTTCAAAGTATGTTACTGTAAGTATGGGAATCGCAGGATTTGTTCCGGCTTATAATAATGATTTTAAGAAACTATA
TCAGGAAGCGGATAATGCACTTTATCTTGCCAAAAAGAATGGAAGAAACTGTATTGTCTATGATGGAAAAGTCTATGGCA
GTATAATGAATGGGGCATCAAGAGTTGCTTCTACATAA

Upstream 100 bases:

>100_bases
TTGTGCATGTTGTATTGTGCATGACTGCTTATTTCATATTTTCTATTGTTTTAATGTATATAAAGTTGTATTATTAAAAG
CATGATGTTTTAATTCATTA

Downstream 100 bases:

>100_bases
GAAATGGTGTATATTAGTGACTGATATTGCAATTACAAGATGAGGAAGCGGAGGAAATAATATGCTGACAGTGACGATTC
TTTTGGATTCTGTGGAGAAG

Product: two-component system PleD-like family response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MGRVDCMGAKGKMIELNRGVSDINMKRAYLSSVLLSVAVPVSVIAACIGNWSGVFARNTYIVVAGLMEVFQLLFMFVLRK
QYSLDEFDRFHAIYTAYFYVTFVYLMFGAVCDIAQSGSILFYLAACVYIVFIPAFTKAECIGILMFQTVVVILLSIVSSM
DLRMFFDVCIIQAATILLVAYQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWPFCERNRLSVAMIAV
DVDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEEFIVFVQDMDEESLISLAMKIRNNLDQKHIEHAYY
GVSKYVTVSMGIAGFVPAYNNDFKKLYQEADNALYLAKKNGRNCIVYDGKVYGSIMNGASRVAST

Sequences:

>Translated_385_residues
MGRVDCMGAKGKMIELNRGVSDINMKRAYLSSVLLSVAVPVSVIAACIGNWSGVFARNTYIVVAGLMEVFQLLFMFVLRK
QYSLDEFDRFHAIYTAYFYVTFVYLMFGAVCDIAQSGSILFYLAACVYIVFIPAFTKAECIGILMFQTVVVILLSIVSSM
DLRMFFDVCIIQAATILLVAYQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWPFCERNRLSVAMIAV
DVDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEEFIVFVQDMDEESLISLAMKIRNNLDQKHIEHAYY
GVSKYVTVSMGIAGFVPAYNNDFKKLYQEADNALYLAKKNGRNCIVYDGKVYGSIMNGASRVAST
>Mature_384_residues
GRVDCMGAKGKMIELNRGVSDINMKRAYLSSVLLSVAVPVSVIAACIGNWSGVFARNTYIVVAGLMEVFQLLFMFVLRKQ
YSLDEFDRFHAIYTAYFYVTFVYLMFGAVCDIAQSGSILFYLAACVYIVFIPAFTKAECIGILMFQTVVVILLSIVSSMD
LRMFFDVCIIQAATILLVAYQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWPFCERNRLSVAMIAVD
VDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEEFIVFVQDMDEESLISLAMKIRNNLDQKHIEHAYYG
VSKYVTVSMGIAGFVPAYNNDFKKLYQEADNALYLAKKNGRNCIVYDGKVYGSIMNGASRVAST

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=178, Percent_Identity=35.9550561797753, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=36.0248447204969, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=36.25, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1786584, Length=210, Percent_Identity=29.5238095238095, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87081881, Length=194, Percent_Identity=34.020618556701, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787802, Length=264, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1788381, Length=188, Percent_Identity=30.8510638297872, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787816, Length=169, Percent_Identity=34.3195266272189, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787541, Length=158, Percent_Identity=32.2784810126582, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87081974, Length=155, Percent_Identity=32.258064516129, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788085, Length=178, Percent_Identity=26.4044943820225, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=165, Percent_Identity=34.5454545454545, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87081977, Length=158, Percent_Identity=31.0126582278481, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 43314; Mature: 43183

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEEEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GRVDCMGAKGKMIELNRGVSDINMKRAYLSSVLLSVAVPVSVIAACIGNWSGVFARNTY
CCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCHH
IVVAGLMEVFQLLFMFVLRKQYSLDEFDRFHAIYTAYFYVTFVYLMFGAVCDIAQSGSIL
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
FYLAACVYIVFIPAFTKAECIGILMFQTVVVILLSIVSSMDLRMFFDVCIIQAATILLVA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
YQHNLAVQRVRVNMQLKRKKDYSEHDALTGLYNRRGLDARIKAIWPFCERNRLSVAMIAV
HHHHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHCCCHHCCCCCEEEEEEE
DVDYFKKYNDTFGHPKGDECLKTVAGILKNSAQRSTDVVTRTGGEEFIVFVQDMDEESLI
EHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHEECCCCEEEEEEECCCHHHHH
SLAMKIRNNLDQKHIEHAYYGVSKYVTVSMGIAGFVPAYNNDFKKLYQEADNALYLAKKN
HHHHHHHHCCCHHHHHHHHHHHHHHEEEEECHHHCCCCCCCHHHHHHHHCCCEEEEEECC
GRNCIVYDGKVYGSIMNGASRVAST
CCEEEEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]